RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 MS4A1P11836 297 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 CNGA1P29973 690 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 CATSPERGQ6ZRH7 1159 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 TDHQ8IZJ6 230 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 C12orf42Q96LP6 360 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 LBHD1Q9BQE6 289 aaPredicted RBP11.63□□□□□ -0.55
VRK3-224ENST00000601849 KIAA1683Q9H0B3 1180 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 DNAJC18Q9H819 358 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 SLC5A4Q9NY91 659 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 PRKAG2Q9UGJ0 569 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 DBNLQ9UJU6 430 aaKnown RBP11.63□□□□□ -0.55
VRK3-224ENST00000601849 TNNQ9UQP3 1299 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 ATAD5Q96QE3 1844 aa11.63□□□□□ -0.55
VRK3-224ENST00000601849 MAGEB6P1A0A0J9YX57 407 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 SLC15A5A6NIM6 579 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 STRNO43815 780 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 SYN1P17600 705 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 JAG1P78504 1218 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 LRIT3Q3SXY7 679 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 MORN1Q5T089 497 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 DPP9Q86TI2 863 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 AMOTL1Q8IY63 956 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 CLASRPQ8N2M8 674 aaKnown RBP11.62□□□□□ -0.55
VRK3-224ENST00000601849 USP6NLQ92738 828 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 EAF2Q96CJ1 260 aaPredicted RBP11.62□□□□□ -0.55
VRK3-224ENST00000601849 CRNKL1Q9BZJ0 848 aaKnown RBP11.62□□□□□ -0.55
VRK3-224ENST00000601849 PORCNQ9H237 461 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 C1orf115Q9H7X2 142 aa11.62□□□□□ -0.55
VRK3-224ENST00000601849 MPHOSPH10O00566 681 aaKnown RBP11.61□□□□□ -0.55
VRK3-224ENST00000601849 PTPREP23469 700 aa11.61□□□□□ -0.55
VRK3-224ENST00000601849 COG2Q14746 738 aa11.61□□□□□ -0.55
VRK3-224ENST00000601849 SLC9C2Q5TAH2 1124 aa11.61□□□□□ -0.55
VRK3-224ENST00000601849 AACSQ86V21 672 aa11.61□□□□□ -0.55
VRK3-224ENST00000601849 DDRGK1Q96HY6 314 aa11.61□□□□□ -0.55
VRK3-224ENST00000601849 LRCH3Q96II8 777 aa11.61□□□□□ -0.55
VRK3-224ENST00000601849 CHMP4BQ9H444 224 aaKnown RBP11.61□□□□□ -0.55
VRK3-224ENST00000601849 LAMA3Q16787 3333 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 DLL1O00548 723 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 PEX10O60683 326 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 HMMRO75330 724 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 IFIT2P09913 472 aaKnown RBP11.6□□□□□ -0.55
VRK3-224ENST00000601849 VCAM1P19320 739 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 CCND3P30281 292 aaPredicted RBP11.6□□□□□ -0.55
VRK3-224ENST00000601849 MAGEA10P43363 369 aaPredicted RBP11.6□□□□□ -0.55
VRK3-224ENST00000601849 HNRNPUQ00839 825 aaKnown RBP eCLIP11.6□□□□□ -0.55
VRK3-224ENST00000601849 LHX8Q68G74 356 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 LBX2Q6XYB7 198 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 DEFB123Q8N688 67 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 ARRDC4Q8NCT1 418 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 LPAR1Q92633 364 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 SENP6Q9GZR1 1112 aaPredicted RBP11.6□□□□□ -0.55
VRK3-224ENST00000601849 RPAP3Q9H6T3 665 aaPredicted RBP11.6□□□□□ -0.55
VRK3-224ENST00000601849 SH2D4AQ9H788 454 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 MCM9Q9NXL9 1143 aa11.6□□□□□ -0.55
VRK3-224ENST00000601849 MAST2Q6P0Q8 1798 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 DOCK3Q8IZD9 2030 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 HOXC6P09630 235 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 COL6A1P12109 1028 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 MNX1P50219 401 aaPredicted RBP11.59□□□□□ -0.55
VRK3-224ENST00000601849 PLCD1P51178 756 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 CCL14Q16627 93 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 MB21D1Q8N884 522 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 TANGO6Q9C0B7 1094 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 ARHGEF10LQ9HCE6 1279 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 TLR7Q9NYK1 1049 aaKnown RBP11.59□□□□□ -0.55
VRK3-224ENST00000601849 SWAP70Q9UH65 585 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 DDX20Q9UHI6 824 aaKnown RBP11.59□□□□□ -0.55
VRK3-224ENST00000601849 EXOC6BQ9Y2D4 811 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 NDUFB9Q9Y6M9 179 aa11.59□□□□□ -0.55
VRK3-224ENST00000601849 SOX1O00570 391 aaPredicted RBP11.58□□□□□ -0.56
VRK3-224ENST00000601849 GRB14Q14449 540 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 SHROOM1Q2M3G4 852 aaPredicted RBP11.58□□□□□ -0.56
VRK3-224ENST00000601849 CEP85Q6P2H3 762 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 TMEM179Q6ZVK1 233 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 RPAP2Q8IXW5 612 aaPredicted RBP11.58□□□□□ -0.56
VRK3-224ENST00000601849 ACER1Q8TDN7 264 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 KIF1BPQ96EK5 621 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.58□□□□□ -0.56
VRK3-224ENST00000601849 MROH8Q9H579 483 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 ANTXR1Q9H6X2 564 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 PFASO15067 1338 aa11.58□□□□□ -0.56
VRK3-224ENST00000601849 KBTBD13C9JR72 458 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 DNM1LO00429 736 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 SHMT1P34896 483 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 MDM2Q00987 491 aaPredicted RBP11.57□□□□□ -0.56
VRK3-224ENST00000601849 PLS1Q14651 629 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 SEPT2Q15019 361 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 LRRC26Q2I0M4 334 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 SHCBP1Q8NEM2 672 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 RHPN1Q8TCX5 695 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.57□□□□□ -0.56
VRK3-224ENST00000601849 CCDC17Q96LX7 622 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 DNAJC2Q99543 621 aaKnown RBP11.57□□□□□ -0.56
VRK3-224ENST00000601849 RIOK1Q9BRS2 568 aaKnown RBP11.57□□□□□ -0.56
VRK3-224ENST00000601849 BCL11AQ9H165 835 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 IL1RAPL2Q9NP60 686 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 ATP8A2Q9NTI2 1148 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 BTBD7Q9P203 1132 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 STXBP5LQ9Y2K9 1186 aa11.57□□□□□ -0.56
VRK3-224ENST00000601849 COL6A3P12111 3177 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms