RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TSPY8P0CW00 308 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 NT5C2P49902 561 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 BACE1P56817 501 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 MAP2K1Q02750 393 aaPredicted RBP22.9■■□□□ 1.26
UPF1-209ENST00000600310 CCL15Q16663 113 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 FAM47AQ5JRC9 791 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 PRRT2Q7Z6L0 340 aaPredicted RBP22.9■■□□□ 1.26
UPF1-209ENST00000600310 TOMM22Q9NS69 142 aa22.9■■□□□ 1.26
UPF1-209ENST00000600310 PLIN4Q96Q06 1357 aa22.89■■□□□ 1.26
UPF1-209ENST00000600310 TSPY2A6NKD2 308 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 C19orf81C9J6K1 198 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 USP17L10C9JJH3 530 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 RANBP6O60518 1105 aaKnown RBP22.89■■□□□ 1.25
UPF1-209ENST00000600310 ICA1Q05084 483 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 MOGSQ13724 837 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 SH3D19Q5HYK7 790 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 RRP12Q5JTH9 1297 aaKnown RBP22.89■■□□□ 1.25
UPF1-209ENST00000600310 SIAH1Q8IUQ4 282 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 ACER1Q8TDN7 264 aa22.89■■□□□ 1.25
UPF1-209ENST00000600310 NEDD4P46934 1319 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 PHIPQ8WWQ0 1821 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 SLC27A2O14975 620 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 EPB41L2O43491 1005 aaKnown RBP22.88■■□□□ 1.25
UPF1-209ENST00000600310 MTMR2Q13614 643 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 CREB3L3Q68CJ9 461 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 FASTKD5Q7L8L6 764 aaKnown RBP22.88■■□□□ 1.25
UPF1-209ENST00000600310 IFNL1Q8IU54 200 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 CLEC10AQ8IUN9 316 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 PTPN18Q99952 460 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 KIAA1683Q9H0B3 1180 aa22.88■■□□□ 1.25
UPF1-209ENST00000600310 LAMA4Q16363 1823 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 A0A1W2PRG0 241 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 ESR2Q92731 530 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 CEP95Q96GE4 821 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 FEZ1Q99689 392 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 KRT23Q9C075 422 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 CNNM2Q9H8M5 875 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 ARHGEF10LQ9HCE6 1279 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 WBP1LQ9NX94 342 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 TAF6LQ9Y6J9 622 aa22.87■■□□□ 1.25
UPF1-209ENST00000600310 IGF2BP3O00425 579 aaKnown RBP eCLIP22.86■■□□□ 1.25
UPF1-209ENST00000600310 EEF2P13639 858 aaKnown RBP22.86■■□□□ 1.25
UPF1-209ENST00000600310 HMGCS2P54868 508 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 RNF20Q5VTR2 975 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 USP17L2Q6R6M4 530 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 NKX2-3Q8TAU0 364 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 TCP11L1Q9NUJ3 509 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 MTMR4Q9NYA4 1195 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 NYAP2Q9P242 653 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 TMX2Q9Y320 296 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 MYH8P13535 1937 aa22.86■■□□□ 1.25
UPF1-209ENST00000600310 B4E1Z4 1266 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 BTBD19C9JJ37 291 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 E7EWF7 191 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 OTUD7BQ6GQQ9 843 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 GPAT2Q6NUI2 795 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 ANKRD23Q86SG2 305 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 PROCA1Q8NCQ7 364 aaPredicted RBP22.85■■□□□ 1.25
UPF1-209ENST00000600310 C12orf42Q96LP6 360 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 ZCCHC17Q9NP64 241 aaKnown RBP22.85■■□□□ 1.25
UPF1-209ENST00000600310 IL17RBQ9NRM6 502 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 EMILIN3Q9NT22 766 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 TMOD4Q9NZQ9 345 aa22.85■■□□□ 1.25
UPF1-209ENST00000600310 GREB1LQ9C091 1923 aaPredicted RBP22.84■■□□□ 1.25
UPF1-209ENST00000600310 ALDH1A1P00352 501 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 NOVP48745 357 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 USP14P54578 494 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 TRDNQ13061 729 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 PPP4R3BQ5MIZ7 849 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 GADL1Q6ZQY3 521 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 STOX1Q6ZVD7 989 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 FAM43AQ8N2R8 423 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 SH2D4AQ9H788 454 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 ZSWIM5Q9P217 1185 aa22.84■■□□□ 1.25
UPF1-209ENST00000600310 EIF5BO60841 1220 aaKnown RBP22.83■■□□□ 1.25
UPF1-209ENST00000600310 KDM4AO75164 1064 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 TTLL1O95922 423 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 HSPA4P34932 840 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 ATP2B2Q01814 1243 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 DGKZQ13574 1117 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 MKL1Q969V6 931 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 RNF186Q9NXI6 227 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 SYNPO2Q9UMS6 1093 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 AGTPBP1Q9UPW5 1226 aa22.83■■□□□ 1.25
UPF1-209ENST00000600310 NMT2O60551 498 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 CAPN15O75808 1086 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 ZYXQ15942 572 aaKnown RBP22.82■■□□□ 1.24
UPF1-209ENST00000600310 TSGA10IPQ3SY00 556 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 NCOA7Q8NI08 942 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 KCNB2Q92953 911 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 BEGAINQ9BUH8 593 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 USP26Q9BXU7 913 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 CLIP2Q9UDT6 1046 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 SLC45A1Q9Y2W3 748 aa22.82■■□□□ 1.24
UPF1-209ENST00000600310 CA12O43570 354 aa22.81■■□□□ 1.24
UPF1-209ENST00000600310 C8orf34Q49A92 452 aa22.81■■□□□ 1.24
UPF1-209ENST00000600310 RALYLQ86SE5 291 aaKnown RBP22.81■■□□□ 1.24
UPF1-209ENST00000600310 IQCA1Q86XH1 822 aa22.81■■□□□ 1.24
UPF1-209ENST00000600310 VCPKMTQ9H867 229 aa22.81■■□□□ 1.24
UPF1-209ENST00000600310 SAGE1Q9NXZ1 904 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms