RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 HSPD1P10809 573 aaKnown RBP17.36■□□□□ 0.37
VRK3-206ENST00000594090 RASA1P20936 1047 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 MFAP1P55081 439 aaKnown RBP17.36■□□□□ 0.37
VRK3-206ENST00000594090 ALX1Q15699 326 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 USP17L2Q6R6M4 530 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 ACER1Q8TDN7 264 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 FEZ1Q99689 392 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 MKNK2Q9HBH9 465 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 ZMYM6O95789 1325 aa17.36■□□□□ 0.37
VRK3-206ENST00000594090 SP3Q02447 781 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 ICA1Q05084 483 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 ZYXQ15942 572 aaKnown RBP17.35■□□□□ 0.37
VRK3-206ENST00000594090 SKAP1Q86WV1 359 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 CLEC10AQ8IUN9 316 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 C12orf42Q96LP6 360 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 KIAA1683Q9H0B3 1180 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 ZNF287Q9HBT7 754 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 PNMA3Q9UL41 463 aa17.35■□□□□ 0.37
VRK3-206ENST00000594090 SLC3A2P08195 630 aaKnown RBP17.34■□□□□ 0.37
VRK3-206ENST00000594090 USP14P54578 494 aa17.34■□□□□ 0.37
VRK3-206ENST00000594090 PABPC4Q13310 644 aaKnown RBP eCLIP17.34■□□□□ 0.37
VRK3-206ENST00000594090 C17orf99Q6UX52 265 aa17.34■□□□□ 0.37
VRK3-206ENST00000594090 CTU1Q7Z7A3 348 aaKnown RBP17.34■□□□□ 0.37
VRK3-206ENST00000594090 ERO1AQ96HE7 468 aa17.34■□□□□ 0.37
VRK3-206ENST00000594090 EMILIN3Q9NT22 766 aa17.34■□□□□ 0.37
VRK3-206ENST00000594090 CPA4Q9UI42 421 aa17.34■□□□□ 0.37
VRK3-206ENST00000594090 LAMA4Q16363 1823 aa17.33■□□□□ 0.37
VRK3-206ENST00000594090 A0A1W2PRG0 241 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 PRDM1O75626 825 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 FGAP02671 866 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 PDE4BQ07343 736 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 CD99L2Q8TCZ2 262 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 SMCR8Q8TEV9 937 aaPredicted RBP17.33■□□□□ 0.36
VRK3-206ENST00000594090 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.33■□□□□ 0.36
VRK3-206ENST00000594090 IL25Q9H293 177 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 ANAPC4Q9UJX5 808 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 ZSWIM8A7E2V4 1837 aa17.33■□□□□ 0.36
VRK3-206ENST00000594090 RAD50Q92878 1312 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 BCRP11274 1271 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 OSBPP22059 807 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 CHMLP26374 656 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 HOXA7P31268 230 aaPredicted RBP17.32■□□□□ 0.36
VRK3-206ENST00000594090 CTDSPL2Q05D32 466 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 SIAH1Q8IUQ4 282 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 MCOLN1Q9GZU1 580 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 ASCC2Q9H1I8 757 aaPredicted RBP17.32■□□□□ 0.36
VRK3-206ENST00000594090 ARHGEF10LQ9HCE6 1279 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 PLIN4Q96Q06 1357 aa17.32■□□□□ 0.36
VRK3-206ENST00000594090 VCAM1P19320 739 aa17.31■□□□□ 0.36
VRK3-206ENST00000594090 CAP1Q01518 475 aa17.31■□□□□ 0.36
VRK3-206ENST00000594090 ERICH6BQ5W0A0 696 aa17.31■□□□□ 0.36
VRK3-206ENST00000594090 ZNF444Q8N0Y2 327 aaPredicted RBP17.31■□□□□ 0.36
VRK3-206ENST00000594090 SH2D4AQ9H788 454 aa17.31■□□□□ 0.36
VRK3-206ENST00000594090 KANSL2Q9H9L4 492 aa17.31■□□□□ 0.36
VRK3-206ENST00000594090 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.31■□□□□ 0.36
VRK3-206ENST00000594090 IRX3P78415 501 aaPredicted RBP17.3■□□□□ 0.36
VRK3-206ENST00000594090 LACTBP83111 547 aaPredicted RBP17.3■□□□□ 0.36
VRK3-206ENST00000594090 RUFY2Q8WXA3 655 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 DSCC1Q9BVC3 393 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 TMX2Q9Y320 296 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 EEF2P13639 858 aaKnown RBP17.3■□□□□ 0.36
VRK3-206ENST00000594090 ATP2B2Q01814 1243 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 BMP2KLQ5H9B9 411 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 OTOP1Q7RTM1 612 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 TRIM17Q9Y577 477 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 TACC3Q9Y6A5 838 aa17.3■□□□□ 0.36
VRK3-206ENST00000594090 IGKV6D-41A0A0C4DH26 115 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 TSPY3P0CV98 308 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 TSPY8P0CW00 308 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 GCLCP48506 637 aaPredicted RBP17.29■□□□□ 0.36
VRK3-206ENST00000594090 HAND2P61296 217 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 KIF22Q14807 665 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 PKN2Q16513 984 aaKnown RBP17.29■□□□□ 0.36
VRK3-206ENST00000594090 ARHGAP39Q9C0H5 1083 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 VCPKMTQ9H867 229 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 EFCC1Q9HA90 598 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 INCENPQ9NQS7 918 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 PPP4R2Q9NY27 417 aa17.29■□□□□ 0.36
VRK3-206ENST00000594090 MYH4Q9Y623 1939 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 MGAMO43451 1857 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L15C9J2P7 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L13C9JLJ4 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L11C9JVI0 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L18D6R9N7 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L22D6RA61 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L17D6RBQ6 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L19D6RCP7 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L20D6RJB6 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 FGRP09769 529 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 HERVK_113P62684 666 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 TFAP4Q01664 338 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 USP17L24Q0WX57 530 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 FAM110CQ1W6H9 321 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 FAM47AQ5JRC9 791 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 KIAA1755Q5JYT7 1200 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 ANKRD13CQ8N6S4 541 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 NEDD1Q8NHV4 660 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 LPAR1Q92633 364 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 CEP95Q96GE4 821 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 NBPF3Q9H094 633 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 194.2 ms