RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 AKAP17AQ02040 695 aaKnown RBP23.03■■□□□ 1.28
TRIM47-204ENST00000587339 GMLQ99445 158 aa23.03■■□□□ 1.28
TRIM47-204ENST00000587339 TDRD3Q9H7E2 651 aaKnown RBP23.03■■□□□ 1.28
TRIM47-204ENST00000587339 NPM3O75607 178 aaKnown RBP23.02■■□□□ 1.28
TRIM47-204ENST00000587339 PLEKHA8P1O95397 391 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 KIF5BP33176 963 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 ATL3Q6DD88 541 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 ZFPM1Q8IX07 1006 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 PRMT6Q96LA8 375 aaPredicted RBP23.02■■□□□ 1.28
TRIM47-204ENST00000587339 FAM198AQ9UFP1 575 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 ZBTB12Q9Y330 459 aaPredicted RBP23.02■■□□□ 1.28
TRIM47-204ENST00000587339 KIF23Q02241 960 aaPredicted RBP23.02■■□□□ 1.28
TRIM47-204ENST00000587339 FUT2Q10981 343 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 TMTC3Q6ZXV5 915 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 BRAPQ7Z569 592 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 LEO1Q8WVC0 666 aaPredicted RBP23.02■■□□□ 1.28
TRIM47-204ENST00000587339 ZNF396Q96N95 335 aaPredicted RBP23.02■■□□□ 1.28
TRIM47-204ENST00000587339 MAP3K14Q99558 947 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 EHD4Q9H223 541 aa23.02■■□□□ 1.28
TRIM47-204ENST00000587339 FER1L6Q2WGJ9 1857 aa23.01■■□□□ 1.27
TRIM47-204ENST00000587339 NFKBIEO00221 500 aa23.01■■□□□ 1.27
TRIM47-204ENST00000587339 ZSCAN29Q8IWY8 852 aaPredicted RBP23.01■■□□□ 1.27
TRIM47-204ENST00000587339 TMEM47Q9BQJ4 181 aa23.01■■□□□ 1.27
TRIM47-204ENST00000587339 CXCL9Q07325 125 aa23■■□□□ 1.27
TRIM47-204ENST00000587339 TPRNQ4KMQ1 711 aa23■■□□□ 1.27
TRIM47-204ENST00000587339 AGBL3Q8NEM8 1001 aa23■■□□□ 1.27
TRIM47-204ENST00000587339 CEP95Q96GE4 821 aa23■■□□□ 1.27
TRIM47-204ENST00000587339 PRPF3O43395 683 aaKnown RBP23■■□□□ 1.27
TRIM47-204ENST00000587339 RBM27Q9P2N5 1060 aaKnown RBP23■■□□□ 1.27
TRIM47-204ENST00000587339 PI4KBQ9UBF8 816 aa23■■□□□ 1.27
TRIM47-204ENST00000587339 PLIN4Q96Q06 1357 aa22.99■■□□□ 1.27
TRIM47-204ENST00000587339 SPDYE2BA6NHP3 402 aa22.99■■□□□ 1.27
TRIM47-204ENST00000587339 KIF28PB7ZC32 967 aa22.99■■□□□ 1.27
TRIM47-204ENST00000587339 SPDYE6P0CI01 402 aa22.99■■□□□ 1.27
TRIM47-204ENST00000587339 CEBPZQ03701 1054 aaKnown RBP22.99■■□□□ 1.27
TRIM47-204ENST00000587339 GNL2Q13823 731 aaKnown RBP22.99■■□□□ 1.27
TRIM47-204ENST00000587339 DLGAP5Q15398 846 aa22.99■■□□□ 1.27
TRIM47-204ENST00000587339 SRBD1Q8N5C6 995 aaKnown RBP22.99■■□□□ 1.27
TRIM47-204ENST00000587339 TMEM63CQ9P1W3 806 aa22.99■■□□□ 1.27
TRIM47-204ENST00000587339 V9GY48 417 aaPredicted RBP22.99■■□□□ 1.27
TRIM47-204ENST00000587339 DDTLA6NHG4 134 aaPredicted RBP22.98■■□□□ 1.27
TRIM47-204ENST00000587339 SHMT1P34896 483 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 SYAP1Q96A49 352 aaPredicted RBP22.98■■□□□ 1.27
TRIM47-204ENST00000587339 USP28Q96RU2 1077 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 ENTPD3O75355 529 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 AKR1B1P15121 316 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 ZSCAN23Q3MJ62 389 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 CIAPIN1Q6FI81 312 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.98■■□□□ 1.27
TRIM47-204ENST00000587339 TMOD2Q9NZR1 351 aa22.98■■□□□ 1.27
TRIM47-204ENST00000587339 GOLGA6L4A6NEF3 574 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 MMP1P03956 469 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 TOP1P11387 765 aaKnown RBP22.97■■□□□ 1.27
TRIM47-204ENST00000587339 XBP1P17861 261 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 NOVP48745 357 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 GRM4Q14833 912 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 SAFBQ15424 915 aaKnown RBP eCLIP22.97■■□□□ 1.27
TRIM47-204ENST00000587339 PKN1Q16512 942 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 MYSM1Q5VVJ2 828 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 NLGN2Q8NFZ4 835 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 CNTNAP5Q8WYK1 1306 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 MYH15Q9Y2K3 1946 aa22.97■■□□□ 1.27
TRIM47-204ENST00000587339 LTBP3Q9NS15 1303 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 GNAQP50148 359 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 SH3BP5LQ7L8J4 393 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 FTOQ9C0B1 505 aaKnown RBP eCLIP22.96■■□□□ 1.27
TRIM47-204ENST00000587339 MTMR4Q9NYA4 1195 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 hCG_1642624A0A1W2PR95 340 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 U2AF2P26368 475 aaKnown RBP eCLIP22.96■■□□□ 1.27
TRIM47-204ENST00000587339 TRIM34Q9BYJ4 488 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 RCOR1Q9UKL0 485 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 MTMR7Q9Y216 660 aa22.96■■□□□ 1.27
TRIM47-204ENST00000587339 ATRNL1Q5VV63 1379 aa22.95■■□□□ 1.26
TRIM47-204ENST00000587339 TNIP1Q15025 636 aa22.95■■□□□ 1.26
TRIM47-204ENST00000587339 FOXP4Q8IVH2 680 aaPredicted RBP22.95■■□□□ 1.26
TRIM47-204ENST00000587339 CCDC17Q96LX7 622 aa22.95■■□□□ 1.26
TRIM47-204ENST00000587339 DNAJC18Q9H819 358 aa22.95■■□□□ 1.26
TRIM47-204ENST00000587339 MAD2L2Q9UI95 211 aa22.95■■□□□ 1.26
TRIM47-204ENST00000587339 KCNJ14Q9UNX9 436 aa22.95■■□□□ 1.26
TRIM47-204ENST00000587339 STAG2Q8N3U4 1231 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 SPON1Q9HCB6 807 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 MYH8P13535 1937 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 IGKV6D-41A0A0C4DH26 115 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 CLRN2A0PK11 232 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 GOLGA6L3A6NEY3 463 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 MPHOSPH10O00566 681 aaKnown RBP22.94■■□□□ 1.26
TRIM47-204ENST00000587339 DIS3L2Q8IYB7 885 aaKnown RBP22.94■■□□□ 1.26
TRIM47-204ENST00000587339 RTEL1Q9NZ71 1219 aa22.94■■□□□ 1.26
TRIM47-204ENST00000587339 SLURP2P0DP57 97 aa22.93■■□□□ 1.26
TRIM47-204ENST00000587339 MTMR14Q8NCE2 650 aa22.93■■□□□ 1.26
TRIM47-204ENST00000587339 POLR3EQ9NVU0 708 aa22.93■■□□□ 1.26
TRIM47-204ENST00000587339 VPS54Q9P1Q0 977 aa22.93■■□□□ 1.26
TRIM47-204ENST00000587339 ZNF70Q9UC06 446 aaPredicted RBP22.93■■□□□ 1.26
TRIM47-204ENST00000587339 COL2A1P02458 1487 aaPredicted RBP22.93■■□□□ 1.26
TRIM47-204ENST00000587339 PALM3A6NDB9 673 aaPredicted RBP22.92■■□□□ 1.26
TRIM47-204ENST00000587339 FAM196BA6NMK8 535 aa22.92■■□□□ 1.26
TRIM47-204ENST00000587339 BTBD18B2RXH4 712 aa22.92■■□□□ 1.26
TRIM47-204ENST00000587339 TCP10L2B9ZVM9 353 aa22.92■■□□□ 1.26
TRIM47-204ENST00000587339 TTLL1O95922 423 aa22.92■■□□□ 1.26
TRIM47-204ENST00000587339 ZNF445P59923 1031 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms