RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 USP17L17D6RBQ6 530 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 USP17L19D6RCP7 530 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 USP17L20D6RJB6 530 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 USP17L24Q0WX57 530 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 U2AF1L4Q8WU68 220 aaKnown RBP12.84□□□□□ -0.35
ZNF540-205ENST00000587220 SHISA4Q96DD7 197 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 KIAA1683Q9H0B3 1180 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 ATP8A2Q9NTI2 1148 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 SWAP70Q9UH65 585 aa12.84□□□□□ -0.35
ZNF540-205ENST00000587220 SLC34A2O95436 690 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 TFRCP02786 760 aaKnown RBP12.83□□□□□ -0.36
ZNF540-205ENST00000587220 HMGCRP04035 888 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 CYP2D6P10635 497 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 MAPK4P31152 587 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 ERVK-9P63128 1117 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 ERVK-24P63145 666 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 SEPT2Q15019 361 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 UBE3CQ15386 1083 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 SLFNL1Q499Z3 407 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 ACER1Q8TDN7 264 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 SOCS4Q8WXH5 440 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 DPF3Q92784 378 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 C12orf42Q96LP6 360 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 DEFB118Q96PH6 123 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 TXNRD2Q9NNW7 524 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 SUPT16HQ9Y5B9 1047 aaKnown RBP12.83□□□□□ -0.36
ZNF540-205ENST00000587220 SLC4A4Q9Y6R1 1079 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 DOCK3Q8IZD9 2030 aa12.83□□□□□ -0.36
ZNF540-205ENST00000587220 BAZ2AQ9UIF9 1905 aaKnown RBP12.82□□□□□ -0.36
ZNF540-205ENST00000587220 PRKAB2O43741 272 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 PEX10O60683 326 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 FARP2O94887 1054 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-205ENST00000587220 SGPL1O95470 568 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 VCAM1P19320 739 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 CCNA1P78396 465 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 GABPAQ06546 454 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 WDR78Q5VTH9 848 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 TMEM179Q6ZVK1 233 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 NUDT12Q9BQG2 462 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 HTATIP2Q9BUP3 242 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 DCTPP1Q9H773 170 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 RBPJLQ9UBG7 517 aa12.82□□□□□ -0.36
ZNF540-205ENST00000587220 GLRX3O76003 335 aaKnown RBP12.81□□□□□ -0.36
ZNF540-205ENST00000587220 CYP2B6P20813 491 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 EVX2Q03828 476 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 CATSPERGQ6ZRH7 1159 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 SLC44A5Q8NCS7 719 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 DYNLL2Q96FJ2 89 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 TANGO6Q9C0B7 1094 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.81□□□□□ -0.36
ZNF540-205ENST00000587220 RPAP3Q9H6T3 665 aaPredicted RBP12.81□□□□□ -0.36
ZNF540-205ENST00000587220 SH2D4AQ9H788 454 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 ARHGEF10LQ9HCE6 1279 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 ZBTB47Q9UFB7 747 aaPredicted RBP12.81□□□□□ -0.36
ZNF540-205ENST00000587220 GJD2Q9UKL4 321 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 RABGAP1Q9Y3P9 1069 aa12.81□□□□□ -0.36
ZNF540-205ENST00000587220 USP17L12C9JPN9 530 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 USP17L21D6R901 530 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 CHGBP05060 677 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 CAPN2P17655 700 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 GUCY1A2P33402 732 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 LRRFIP1Q32MZ4 808 aaKnown RBP12.8□□□□□ -0.36
ZNF540-205ENST00000587220 C12orf60Q5U649 245 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 TSHZ3Q63HK5 1081 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 PLEKHH3Q7Z736 793 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 PUS7LQ9H0K6 701 aaKnown RBP12.8□□□□□ -0.36
ZNF540-205ENST00000587220 PORCNQ9H237 461 aa12.8□□□□□ -0.36
ZNF540-205ENST00000587220 HMX1Q9NP08 348 aaPredicted RBP12.8□□□□□ -0.36
ZNF540-205ENST00000587220 PAK6Q9NQU5 681 aaPredicted RBP12.8□□□□□ -0.36
ZNF540-205ENST00000587220 CYP2D7A0A087X1C5 515 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 H0YGN5 161 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 ZFYP08048 801 aaPredicted RBP12.79□□□□□ -0.36
ZNF540-205ENST00000587220 XRCC5P13010 732 aaKnown RBP12.79□□□□□ -0.36
ZNF540-205ENST00000587220 ZKSCAN1P17029 563 aaPredicted RBP12.79□□□□□ -0.36
ZNF540-205ENST00000587220 RGS2P41220 211 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 RRP1P56182 461 aaKnown RBP12.79□□□□□ -0.36
ZNF540-205ENST00000587220 ATP2B2Q01814 1243 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 ICA1Q05084 483 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 Q3C1V9 767 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 GPR142Q7Z601 462 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 TRMT44Q8IYL2 757 aaKnown RBP12.79□□□□□ -0.36
ZNF540-205ENST00000587220 KBTBD3Q8NAB2 608 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 TRIB2Q92519 343 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 CCDC17Q96LX7 622 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 ARPP21Q9UBL0 812 aaPredicted RBP12.79□□□□□ -0.36
ZNF540-205ENST00000587220 IVNS1ABPQ9Y6Y0 642 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 RPTORQ8N122 1335 aa12.79□□□□□ -0.36
ZNF540-205ENST00000587220 PLXNB2O15031 1838 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 A0A1W2PRG0 241 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 ERC2O15083 957 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 RNF113AO15541 343 aaKnown RBP12.78□□□□□ -0.36
ZNF540-205ENST00000587220 PRKAR2AP13861 404 aaKnown RBP12.78□□□□□ -0.36
ZNF540-205ENST00000587220 AKR1B1P15121 316 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 CDK8P49336 464 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 COG2Q14746 738 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 LPAR1Q92633 364 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 HOXC10Q9NYD6 342 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 PCDHB15Q9Y5E8 787 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 TTC41PQ6P2S7 1318 aa12.78□□□□□ -0.36
ZNF540-205ENST00000587220 SPDYE16A6NNV3 312 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms