RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	ABCF2	Q9UG63	623 aa		13.23	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	PRKAB2	O43741	272 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	E4F1	Q66K89	784 aa	Predicted RBP	13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	PPP4R3CP	Q6ZMV5	832 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	RALYL	Q86SE5	291 aa	Known RBP	13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	DRC1	Q96MC2	740 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MAP3K20	Q9NYL2	800 aa	Known RBP	13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SYNPO2	Q9UMS6	1093 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	PAXBP1	Q9Y5B6	917 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	NUP98	P52948	1817 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SPTLC2	O15270	562 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ZNF202	O95125	648 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SLC5A1	P13866	664 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	GYG1	P46976	350 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	AMOTL1	Q8IY63	956 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	LINC00301	Q8NCQ3	95 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MRFAP1L1	Q96HT8	127 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CDC5L	Q99459	802 aa	Known RBP	13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FBXO9	Q9UK97	447 aa	Predicted RBP	13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MROH7-TTC4	A0A0A0MT08	1334 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	CNTNAP4	Q9C0A0	1308 aa		13.22	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SLC3A2	P08195	630 aa	Known RBP	13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	ADD2	P35612	726 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	PNOC	Q13519	176 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	SYNE3	Q6ZMZ3	975 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	C1orf131	Q8NDD1	294 aa	Known RBP	13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	LPIN2	Q92539	896 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	TRERF1	Q96PN7	1200 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	KIAA1468	Q9P260	1216 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	FOXN1	O15353	648 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	GNL2	Q13823	731 aa	Known RBP	13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	VGLL2	Q8N8G2	317 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	KIF18A	Q8NI77	898 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	BTAF1	O14981	1849 aa		13.21	□□□□□ -0.29
CDK5RAP3-231	ENST00000584063	MROH5	Q6ZUA9	1318 aa		13.21	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ECEL1	O95672	775 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	APBA3	O96018	575 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	NCOA7	Q8NI08	942 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ARMT1	Q9H993	441 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	TFCP2L1	Q9NZI6	479 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	OGFR	Q9NZT2	677 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	TMEM232	C9JQI7	657 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ONECUT3	O60422	494 aa	Predicted RBP	13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	PFKFB1	P16118	471 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	PDE6A	P16499	860 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RSPH1	Q8WYR4	309 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	FAM117A	Q9C073	453 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	DONSON	Q9NYP3	566 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	DNAI1	Q9UI46	699 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RASGRF1	Q13972	1273 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	NFIX	Q14938	502 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RRP12	Q5JTH9	1297 aa	Known RBP	13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RC3H1	Q5TC82	1133 aa	Known RBP	13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	MYSM1	Q5VVJ2	828 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	MIGA1	Q8NAN2	632 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	FBXO18	Q8NFZ0	1043 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	NUCKS1	Q9H1E3	243 aa	Known RBP	13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RMI1	Q9H9A7	625 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	DDX41	Q9UJV9	622 aa	Known RBP	13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	COMMD10	Q9Y6G5	202 aa		13.2	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ABCC12	Q96J65	1359 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	THSD7A	Q9UPZ6	1657 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	KLHL33	A6NCF5	533 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	CTAGE5	O15320	804 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	SFPQ	P23246	707 aa	Known RBP eCLIP	13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	FLT3	P36888	993 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ZNF827	Q17R98	1081 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	LRCH2	Q5VUJ6	765 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ADAL	Q6DHV7	355 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	CCDC70	Q6NSX1	233 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	MAGEB6	Q8N7X4	407 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	PPP1R13B	Q96KQ4	1090 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	LRP2BP	Q9P2M1	347 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RANBP6	O60518	1105 aa	Known RBP	13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	SERPINC1	P01008	464 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	GUCY1A2	P33402	732 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	KIF23	Q02241	960 aa	Predicted RBP	13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	MECOM	Q03112	1051 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	CFAP100	Q494V2	611 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	SARM1	Q6SZW1	724 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	PDILT	Q8N807	584 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	CNBD1	Q8NA66	436 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	SPATA5	Q8NB90	893 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	BRWD3	Q6RI45	1802 aa		13.19	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	MBD4	O95243	580 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	PPP4C	P60510	307 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RPS8	P62241	208 aa	Known RBP	13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	RBM6	P78332	1123 aa	Known RBP	13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	NOL10	Q9BSC4	688 aa	Known RBP	13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.18	□□□□□ -0.3	1e-7	■■■□□ 14.8
CDK5RAP3-231	ENST00000584063	NYX	Q9GZU5	481 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	NAT10	Q9H0A0	1025 aa	Known RBP	13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	TOMM22	Q9NS69	142 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ZNF446	Q9NWS9	450 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	ANKIB1	Q9P2G1	1089 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	COBL	O75128	1261 aa		13.18	□□□□□ -0.3
CDK5RAP3-231	ENST00000584063	CDC25B	P30305	580 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms