RNA–Protein interactions for RNA: ENST00000583988.1

PPP4R1-227, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-227ENST00000583988 SUPT16HQ9Y5B9 1047 aaKnown RBP6.48□□□□□ -1.37
PPP4R1-227ENST00000583988 RBAK-RBAKDNI3L0D1 243 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 CLCN7P51798 805 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 LCE3BQ5TA77 95 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 C9orf131Q5VYM1 1079 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 SLC23A3Q6PIS1 610 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 CDH24Q86UP0 819 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 NT5DC4Q86YG4 428 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 KRTAP1-3Q8IUG1 177 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 MFSD4AQ8N468 514 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 TJP2Q9UDY2 1190 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 PITPNM2Q9BZ72 1349 aa6.47□□□□□ -1.37
PPP4R1-227ENST00000583988 BPNT1O95861 308 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 PDE4BQ07343 736 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 MPP2Q14168 576 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 OGFOD2Q6N063 350 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 ZNF746Q6NUN9 644 aaPredicted RBP6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 ATG4DQ86TL0 474 aaPredicted RBP6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 ZNF654Q8IZM8 581 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 TMEM87BQ96K49 555 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 NT5C1AQ9BXI3 368 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 LRRC3Q9BY71 257 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 ATP13A1Q9HD20 1204 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 PRR36Q9H6K5 1346 aa6.46□□□□□ -1.38
PPP4R1-227ENST00000583988 H3BS24 57 aa6.45□□□□□ -1.38
PPP4R1-227ENST00000583988 FBXO27Q8NI29 283 aa6.45□□□□□ -1.38
PPP4R1-227ENST00000583988 SPON2Q9BUD6 331 aa6.45□□□□□ -1.38
PPP4R1-227ENST00000583988 PCDHGB7Q9Y5F8 929 aa6.45□□□□□ -1.38
PPP4R1-227ENST00000583988 CORINQ9Y5Q5 1042 aa6.45□□□□□ -1.38
PPP4R1-227ENST00000583988 CAPN6Q9Y6Q1 641 aa6.45□□□□□ -1.38
PPP4R1-227ENST00000583988 ZNF865P0CJ78 1059 aaPredicted RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 CYP7A1P22680 504 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 RANGAP1P46060 587 aaPredicted RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 RAD51AP2Q09MP3 1159 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 SLC6A19Q695T7 634 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 REC114Q7Z4M0 266 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 KIAA0825Q8IV33 1275 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 MRPL41Q8IXM3 137 aaKnown RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 FAM168AQ92567 244 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 ACSF2Q96CM8 615 aaPredicted RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 EAF1Q96JC9 268 aaPredicted RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 SPATA32Q96LK8 384 aa6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 CARS2Q9HA77 564 aaKnown RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.44□□□□□ -1.38
PPP4R1-227ENST00000583988 CARMIL2Q6F5E8 1435 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 YBX3P16989 372 aaKnown RBP eCLIP6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 PLCG1P19174 1290 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 ERCC5P28715 1186 aaPredicted RBP6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 CRKP46108 304 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 CWF19L2Q2TBE0 894 aaKnown RBP6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 C22orf34Q6ZV56 151 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 MCATQ8IVS2 390 aaKnown RBP6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 SLITRK4Q8IW52 837 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 UBE2FQ969M7 185 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 SEMA3GQ9NS98 782 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 UBP1Q9NZI7 540 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 ZSWIM5Q9P217 1185 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 ADAM30Q9UKF2 790 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 POLR3KQ9Y2Y1 108 aaPredicted RBP6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 ST14Q9Y5Y6 855 aa6.43□□□□□ -1.38
PPP4R1-227ENST00000583988 TNK2Q07912 1038 aa6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 APOBRQ0VD83 1088 aa6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 TMEM201Q5SNT2 666 aa6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 REXO1Q8N1G1 1221 aaKnown RBP6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 FAM13CQ8NE31 585 aa6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 C8orf37Q96NL8 207 aa6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.42□□□□□ -1.38
PPP4R1-227ENST00000583988 UPK3BL1B0FP48 263 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 UPK3BL2E5RIL1 263 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 TLR3O15455 904 aaKnown RBP6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 GRIN3BO60391 1043 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 ATE1O95260 518 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 ETV3P41162 512 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 KIR3DL1P43629 444 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 NKD1Q969G9 470 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 COX4I2Q96KJ9 171 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 EHMT1Q9H9B1 1298 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 BRMS1Q9HCU9 246 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 LMCD1Q9NZU5 365 aa6.41□□□□□ -1.38
PPP4R1-227ENST00000583988 YARSP54577 528 aaKnown RBP6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 ZC3H6P61129 1189 aaKnown RBP6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 PAK2Q13177 524 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 GNL2Q13823 731 aaKnown RBP6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 COL9A2Q14055 689 aaPredicted RBP6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 SEZ6Q53EL9 994 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 SLC43A3Q8NBI5 491 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 FLAD1Q8NFF5 587 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 CCSER2Q9H7U1 834 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 CEP131Q9UPN4 1083 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 CTNND2Q9UQB3 1225 aa6.4□□□□□ -1.38
PPP4R1-227ENST00000583988 HTR3BO95264 441 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 ZNF165P49910 485 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 KCNMB1Q16558 191 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 ZNF648Q5T619 568 aaPredicted RBP6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 THAP5Q7Z6K1 395 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 ZSWIM9Q86XI8 627 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 POU5F2Q8N7G0 328 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 DNAJB8Q8NHS0 232 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 RASGRP4Q8TDF6 673 aa6.39□□□□□ -1.39
PPP4R1-227ENST00000583988 ACBD3Q9H3P7 528 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms