RNA–Protein interactions for RNA: ENST00000583988.1

PPP4R1-227, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-227ENST00000583988 AEBP2Q6ZN18 517 aaPredicted RBP23.25■■□□□ 1.31
PPP4R1-227ENST00000583988 CHIC1Q5VXU3 224 aa22.38■■□□□ 1.17
PPP4R1-227ENST00000583988 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
PPP4R1-227ENST00000583988 PHF23Q9BUL5 403 aaPredicted RBP19.67■□□□□ 0.74
PPP4R1-227ENST00000583988 FOXD1Q16676 465 aa18.41■□□□□ 0.54
PPP4R1-227ENST00000583988 PLPPR3Q6T4P5 718 aa18.05■□□□□ 0.48
PPP4R1-227ENST00000583988 PPP6R1Q9UPN7 881 aa17.47■□□□□ 0.39
PPP4R1-227ENST00000583988 ADRA2BP18089 450 aa17.46■□□□□ 0.39
PPP4R1-227ENST00000583988 PIAS4Q8N2W9 510 aaPredicted RBP17.31■□□□□ 0.36
PPP4R1-227ENST00000583988 MSH5O43196 834 aa17.08■□□□□ 0.32
PPP4R1-227ENST00000583988 POTEDQ86YR6 584 aa16.16■□□□□ 0.18
PPP4R1-227ENST00000583988 SCAF1Q9H7N4 1312 aaKnown RBP15.95■□□□□ 0.14
PPP4R1-227ENST00000583988 MAPK8IP2Q13387 824 aaPredicted RBP15.95■□□□□ 0.14
PPP4R1-227ENST00000583988 PPP4R3CPQ6ZMV5 832 aa15.88■□□□□ 0.13
PPP4R1-227ENST00000583988 DMRT2Q9Y5R5 561 aa15.72■□□□□ 0.11
PPP4R1-227ENST00000583988 CNKSR2Q8WXI2 1034 aa15.48■□□□□ 0.07
PPP4R1-227ENST00000583988 NCBP3Q53F19 620 aaKnown RBP15.37■□□□□ 0.05
PPP4R1-227ENST00000583988 HOXD11P31277 338 aaPredicted RBP15.26■□□□□ 0.03
PPP4R1-227ENST00000583988 RNF216Q9NWF9 866 aaPredicted RBP15.26■□□□□ 0.03
PPP4R1-227ENST00000583988 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
PPP4R1-227ENST00000583988 KCNA4P22459 653 aa15.17■□□□□ 0.02
PPP4R1-227ENST00000583988 NPM3O75607 178 aaKnown RBP15.15■□□□□ 0.02
PPP4R1-227ENST00000583988 DNAJC5BQ9UF47 199 aa14.63□□□□□ -0.07
PPP4R1-227ENST00000583988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.62□□□□□ -0.07
PPP4R1-227ENST00000583988 RNF39Q9H2S5 420 aa14.6□□□□□ -0.07
PPP4R1-227ENST00000583988 CACNB1Q02641 598 aaPredicted RBP14.5□□□□□ -0.09
PPP4R1-227ENST00000583988 C1QBPQ07021 282 aaKnown RBP14.4□□□□□ -0.1
PPP4R1-227ENST00000583988 SLC4A1APQ9BWU0 796 aaKnown RBP14.39□□□□□ -0.11
PPP4R1-227ENST00000583988 SLC4A2P04920 1241 aa14.37□□□□□ -0.11
PPP4R1-227ENST00000583988 U3KPZ7 1027 aaPredicted RBP14.31□□□□□ -0.12
PPP4R1-227ENST00000583988 SPINK5Q9NQ38 1064 aaPredicted RBP14.03□□□□□ -0.16
PPP4R1-227ENST00000583988 FOXD4L1Q9NU39 408 aa14.03□□□□□ -0.16
PPP4R1-227ENST00000583988 CAPN15O75808 1086 aa14.02□□□□□ -0.17
PPP4R1-227ENST00000583988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.01□□□□□ -0.17
PPP4R1-227ENST00000583988 HNRNPUL2Q1KMD3 747 aaKnown RBP14.01□□□□□ -0.17
PPP4R1-227ENST00000583988 MYCNP04198 464 aaPredicted RBP13.99□□□□□ -0.17
PPP4R1-227ENST00000583988 ZBTB22O15209 634 aa13.95□□□□□ -0.18
PPP4R1-227ENST00000583988 SAMD1Q6SPF0 538 aaPredicted RBP13.95□□□□□ -0.18
PPP4R1-227ENST00000583988 APLP2Q06481 763 aa13.93□□□□□ -0.18
PPP4R1-227ENST00000583988 TRHP20396 242 aaPredicted RBP13.88□□□□□ -0.19
PPP4R1-227ENST00000583988 ZNF219Q9P2Y4 722 aaPredicted RBP13.81□□□□□ -0.2
PPP4R1-227ENST00000583988 DSG3P32926 999 aa13.8□□□□□ -0.2
PPP4R1-227ENST00000583988 ABCB7O75027 752 aa13.73□□□□□ -0.21
PPP4R1-227ENST00000583988 EHMT2Q96KQ7 1210 aa13.69□□□□□ -0.22
PPP4R1-227ENST00000583988 ATF5Q9Y2D1 282 aaPredicted RBP13.67□□□□□ -0.22
PPP4R1-227ENST00000583988 CSRNP3Q8WYN3 585 aa13.59□□□□□ -0.23
PPP4R1-227ENST00000583988 POLA2Q14181 598 aa13.56□□□□□ -0.24
PPP4R1-227ENST00000583988 ATXN8OSP0DMR3 200 aa13.53□□□□□ -0.24
PPP4R1-227ENST00000583988 ZBTB12Q9Y330 459 aaPredicted RBP13.27□□□□□ -0.29
PPP4R1-227ENST00000583988 RBM42Q9BTD8 480 aaKnown RBP13.15□□□□□ -0.3
PPP4R1-227ENST00000583988 FBLN2P98095 1184 aa13.12□□□□□ -0.31
PPP4R1-227ENST00000583988 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
PPP4R1-227ENST00000583988 MKRN4PQ13434 485 aaPredicted RBP13.04□□□□□ -0.32
PPP4R1-227ENST00000583988 AKT1S1Q96B36 256 aa12.91□□□□□ -0.34
PPP4R1-227ENST00000583988 SPDYE2BA6NHP3 402 aa12.88□□□□□ -0.35
PPP4R1-227ENST00000583988 SPDYE6P0CI01 402 aa12.88□□□□□ -0.35
PPP4R1-227ENST00000583988 SPDYE2Q495Y8 402 aa12.88□□□□□ -0.35
PPP4R1-227ENST00000583988 ZNF692Q9BU19 519 aaPredicted RBP12.83□□□□□ -0.36
PPP4R1-227ENST00000583988 REM2Q8IYK8 340 aaPredicted RBP12.82□□□□□ -0.36
PPP4R1-227ENST00000583988 CHRDL2Q6WN34 429 aa12.75□□□□□ -0.37
PPP4R1-227ENST00000583988 SSUH2Q9Y2M2 353 aa12.73□□□□□ -0.37
PPP4R1-227ENST00000583988 POTEHQ6S545 545 aa12.71□□□□□ -0.37
PPP4R1-227ENST00000583988 PITPNM1O00562 1244 aa12.69□□□□□ -0.38
PPP4R1-227ENST00000583988 PABPN1Q86U42 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
PPP4R1-227ENST00000583988 SPDYE4A6NLX3 237 aa12.62□□□□□ -0.39
PPP4R1-227ENST00000583988 CLEC11AQ9Y240 323 aa12.62□□□□□ -0.39
PPP4R1-227ENST00000583988 SPDYE1Q8NFV5 336 aaPredicted RBP12.59□□□□□ -0.39
PPP4R1-227ENST00000583988 PIP4P2Q8N4L2 257 aa12.52□□□□□ -0.41
PPP4R1-227ENST00000583988 FXR2P51116 673 aaKnown RBP eCLIP12.47□□□□□ -0.41
PPP4R1-227ENST00000583988 PRR29P0C7W0 189 aa12.43□□□□□ -0.42
PPP4R1-227ENST00000583988 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
PPP4R1-227ENST00000583988 FKBP8Q14318 412 aa12.36□□□□□ -0.43
PPP4R1-227ENST00000583988 STAG3Q9UJ98 1225 aa12.34□□□□□ -0.43
PPP4R1-227ENST00000583988 CHADLQ6NUI6 762 aa12.33□□□□□ -0.44
PPP4R1-227ENST00000583988 PROM2Q8N271 834 aa12.29□□□□□ -0.44
PPP4R1-227ENST00000583988 HAX1O00165 279 aa12.25□□□□□ -0.45
PPP4R1-227ENST00000583988 CREBZFQ9NS37 354 aa12.16□□□□□ -0.46
PPP4R1-227ENST00000583988 FARP1Q9Y4F1 1045 aaPredicted RBP12.14□□□□□ -0.47
PPP4R1-227ENST00000583988 EVX2Q03828 476 aa12.09□□□□□ -0.47
PPP4R1-227ENST00000583988 C19orf67A6NJJ6 358 aa12.06□□□□□ -0.48
PPP4R1-227ENST00000583988 SP7Q8TDD2 431 aaPredicted RBP12.06□□□□□ -0.48
PPP4R1-227ENST00000583988 MIER1Q8N108 512 aa12.04□□□□□ -0.48
PPP4R1-227ENST00000583988 CD44P16070 742 aaKnown RBP12□□□□□ -0.49
PPP4R1-227ENST00000583988 PLEKHG5O94827 1062 aa11.98□□□□□ -0.49
PPP4R1-227ENST00000583988 MNX1P50219 401 aaPredicted RBP11.98□□□□□ -0.49
PPP4R1-227ENST00000583988 PLCD3Q8N3E9 789 aa11.98□□□□□ -0.49
PPP4R1-227ENST00000583988 NPM1P06748 294 aaKnown RBP eCLIP11.97□□□□□ -0.49
PPP4R1-227ENST00000583988 FBXO3Q9UK99 471 aa11.97□□□□□ -0.49
PPP4R1-227ENST00000583988 ZRANB1Q9UGI0 708 aa11.89□□□□□ -0.51
PPP4R1-227ENST00000583988 PAK3O75914 559 aaPredicted RBP11.87□□□□□ -0.51
PPP4R1-227ENST00000583988 GABBR2O75899 941 aa11.82□□□□□ -0.52
PPP4R1-227ENST00000583988 VASPP50552 380 aaPredicted RBP11.82□□□□□ -0.52
PPP4R1-227ENST00000583988 ZBTB47Q9UFB7 747 aaPredicted RBP11.82□□□□□ -0.52
PPP4R1-227ENST00000583988 TSPYL2Q9H2G4 693 aaPredicted RBP11.81□□□□□ -0.52
PPP4R1-227ENST00000583988 ZNF579Q8NAF0 562 aaKnown RBP11.79□□□□□ -0.52
PPP4R1-227ENST00000583988 PHF12Q96QT6 1004 aa11.76□□□□□ -0.53
PPP4R1-227ENST00000583988 RASEFQ8IZ41 740 aa11.75□□□□□ -0.53
PPP4R1-227ENST00000583988 KLHL34Q8N239 644 aa11.74□□□□□ -0.53
PPP4R1-227ENST00000583988 CLCN6P51797 869 aa11.7□□□□□ -0.54
PPP4R1-227ENST00000583988 NUBP1P53384 320 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms