RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 SP110Q9HB58 689 aa8.6□□□□□ -1.03
SMCHD1-207ENST00000581711 MCOLN1Q9GZU1 580 aa8.59□□□□□ -1.03
SMCHD1-207ENST00000581711 C19orf44Q9H6X5 657 aa8.59□□□□□ -1.03
SMCHD1-207ENST00000581711 JAG2Q9Y219 1238 aa8.59□□□□□ -1.03
SMCHD1-207ENST00000581711 DLG4P78352 724 aa8.58□□□□□ -1.04
SMCHD1-207ENST00000581711 GAB4Q2WGN9 574 aa8.58□□□□□ -1.04
SMCHD1-207ENST00000581711 IRF2BP1Q8IU81 584 aa8.58□□□□□ -1.04
SMCHD1-207ENST00000581711 BIN2Q9UBW5 565 aaPredicted RBP8.58□□□□□ -1.04
SMCHD1-207ENST00000581711 GIPC1O14908 333 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 BMP7P18075 431 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 TPP2P29144 1249 aaPredicted RBP8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 PDZD8Q8NEN9 1154 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 BAHD1Q8TBE0 780 aaPredicted RBP8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 Q96M66 194 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 SETDB2Q96T68 719 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 DPH2Q9BQC3 489 aaPredicted RBP8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 DUSP15Q9H1R2 295 aaPredicted RBP8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 SLC6A17Q9H1V8 727 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 ZCCHC4Q9H5U6 513 aa8.57□□□□□ -1.04
SMCHD1-207ENST00000581711 A0A0G2JLL6 359 aaPredicted RBP8.56□□□□□ -1.04
SMCHD1-207ENST00000581711 MYOCOSA0A1B0GUC4 107 aa8.56□□□□□ -1.04
SMCHD1-207ENST00000581711 MAPK1P28482 360 aa8.56□□□□□ -1.04
SMCHD1-207ENST00000581711 ETV3P41162 512 aa8.56□□□□□ -1.04
SMCHD1-207ENST00000581711 ZNF605Q86T29 641 aa8.56□□□□□ -1.04
SMCHD1-207ENST00000581711 SEMA7AO75326 666 aa8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 ZGLP1P0C6A0 271 aa8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 MAPK8P45983 427 aa8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 TIGD5Q53EQ6 642 aa8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 MRPL41Q8IXM3 137 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 LILRA2Q8N149 483 aa8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 TRIT1Q9H3H1 467 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-207ENST00000581711 USP17L7P0C7H9 530 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 EGR3Q06889 387 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 TTBK2Q6IQ55 1244 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 SV2BQ7L1I2 683 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 OXR1Q8N573 874 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 FAM8A1Q9UBU6 413 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 TJP2Q9UDY2 1190 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 DUSP13Q9UII6 198 aa8.54□□□□□ -1.04
SMCHD1-207ENST00000581711 GFRA2O00451 464 aa8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 FOXD2O60548 495 aaPredicted RBP8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 PEX10O60683 326 aa8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 DNAJB8Q8NHS0 232 aa8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 KCNC2Q96PR1 638 aa8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 C12orf49Q9H741 205 aa8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 CWC22Q9HCG8 908 aaKnown RBP8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 TACC3Q9Y6A5 838 aa8.53□□□□□ -1.04
SMCHD1-207ENST00000581711 FITM1A5D6W6 292 aa8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 FMR1Q06787 632 aaKnown RBP eCLIP8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 ALG1LQ6GMV1 187 aa8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 INTS4Q96HW7 963 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 TMEM87BQ96K49 555 aa8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 KRTAP17-1Q9BYP8 105 aa8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 GPATCH2Q9NW75 528 aa8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 CNOT6Q9ULM6 557 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 SPG7Q9UQ90 795 aa8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 YBX2Q9Y2T7 364 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-207ENST00000581711 PGRP06401 933 aa8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 SEPT6Q14141 434 aa8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 NR0B2Q15466 257 aa8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 TCERG1LQ5VWI1 586 aa8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 GPR62Q9BZJ7 368 aa8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 WWC3Q9ULE0 1092 aa8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 TTF2Q9UNY4 1162 aaKnown RBP8.51□□□□□ -1.05
SMCHD1-207ENST00000581711 TEX51A0A1B0GUA7 166 aa8.5□□□□□ -1.05
SMCHD1-207ENST00000581711 SLC6A19Q695T7 634 aa8.5□□□□□ -1.05
SMCHD1-207ENST00000581711 TMEM132EQ6IEE7 984 aa8.5□□□□□ -1.05
SMCHD1-207ENST00000581711 TSPYL5Q86VY4 417 aaPredicted RBP8.5□□□□□ -1.05
SMCHD1-207ENST00000581711 ZNF552Q9H707 407 aaPredicted RBP8.5□□□□□ -1.05
SMCHD1-207ENST00000581711 GCM1Q9NP62 436 aa8.5□□□□□ -1.05
SMCHD1-207ENST00000581711 ADAMTS20P59510 1910 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 LTKP29376 864 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 ZNF385BQ569K4 471 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 MARCH10Q8NA82 808 aaPredicted RBP8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 DTWD2Q8NBA8 298 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 DHX38Q92620 1227 aaKnown RBP8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 SGPP1Q9BX95 441 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 CEP131Q9UPN4 1083 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 KCTD3Q9Y597 815 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 PCDHB5Q9Y5E4 795 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 PCDHA11Q9Y5I1 949 aa8.49□□□□□ -1.05
SMCHD1-207ENST00000581711 TRIM13O60858 407 aa8.48□□□□□ -1.05
SMCHD1-207ENST00000581711 SYN1P17600 705 aa8.48□□□□□ -1.05
SMCHD1-207ENST00000581711 PDE6BP35913 854 aa8.48□□□□□ -1.05
SMCHD1-207ENST00000581711 RPS26P62854 115 aaKnown RBP8.48□□□□□ -1.05
SMCHD1-207ENST00000581711 NFIXQ14938 502 aa8.48□□□□□ -1.05
SMCHD1-207ENST00000581711 RETREG2Q8NC44 543 aa8.48□□□□□ -1.05
SMCHD1-207ENST00000581711 RFXAPO00287 272 aa8.47□□□□□ -1.05
SMCHD1-207ENST00000581711 LMNB1P20700 586 aa8.47□□□□□ -1.05
SMCHD1-207ENST00000581711 ATP2B2Q01814 1243 aa8.47□□□□□ -1.05
SMCHD1-207ENST00000581711 MCATQ8IVS2 390 aaKnown RBP8.47□□□□□ -1.05
SMCHD1-207ENST00000581711 PPP1R13LQ8WUF5 828 aa8.47□□□□□ -1.05
SMCHD1-207ENST00000581711 GNEQ9Y223 722 aaKnown RBP8.47□□□□□ -1.05
SMCHD1-207ENST00000581711 SSPNQ14714 243 aa8.46□□□□□ -1.06
SMCHD1-207ENST00000581711 ACSF2Q96CM8 615 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-207ENST00000581711 RTEL1Q9NZ71 1219 aa8.46□□□□□ -1.06
SMCHD1-207ENST00000581711 GPR160Q9UJ42 338 aa8.46□□□□□ -1.06
SMCHD1-207ENST00000581711 KCNH3Q9ULD8 1083 aa8.46□□□□□ -1.06
SMCHD1-207ENST00000581711 CHRNEQ04844 493 aa8.45□□□□□ -1.06
SMCHD1-207ENST00000581711 PDE4BQ07343 736 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms