RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 CTCFP49711 727 aaPredicted RBP11.33□□□□□ -0.6
CCDC40-214ENST00000575431 JAG1P78504 1218 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 SEPT2Q15019 361 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 AKNAD1Q5T1N1 836 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L2Q6R6M4 530 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 NEDD1Q8NHV4 660 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 STAG1Q8WVM7 1258 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 FEZ1Q99689 392 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 IL25Q9H293 177 aa11.33□□□□□ -0.6
CCDC40-214ENST00000575431 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.33□□□□□ -0.6
CCDC40-214ENST00000575431 PLIN4Q96Q06 1357 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 TSPY2A6NKD2 308 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 BTBD19C9JJ37 291 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 SMIM22K7EJ46 135 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 IGF2BP3O00425 579 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC40-214ENST00000575431 EPB41L2O43491 1005 aaKnown RBP11.32□□□□□ -0.6
CCDC40-214ENST00000575431 TRPA1O75762 1119 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 REC8O95072 547 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 TFAP4Q01664 338 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 ICA1Q05084 483 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 CTDSPL2Q05D32 466 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 MTMR2Q13614 643 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 GADL1Q6ZQY3 521 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 CCDC84Q86UT8 332 aaPredicted RBP11.32□□□□□ -0.6
CCDC40-214ENST00000575431 STK11IPQ8N1F8 1099 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 ESR2Q92731 530 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 C12orf42Q96LP6 360 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 PTPN18Q99952 460 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 KRT23Q9C075 422 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 CNNM2Q9H8M5 875 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 ZFYVE28Q9HCC9 887 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 NYAP2Q9P242 653 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 PNMA3Q9UL41 463 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 AGTPBP1Q9UPW5 1226 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 TMX2Q9Y320 296 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 PTPRFP10586 1907 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 LAMA4Q16363 1823 aa11.32□□□□□ -0.6
CCDC40-214ENST00000575431 PDHXO00330 501 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 RANBP6O60518 1105 aaKnown RBP11.31□□□□□ -0.6
CCDC40-214ENST00000575431 PRDM1O75626 825 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 OSBPP22059 807 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 HOXA7P31268 230 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-214ENST00000575431 HMGCS2P54868 508 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 HAND2P61296 217 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 PTH1RQ03431 593 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 TRDNQ13061 729 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 MOGSQ13724 837 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 TAF1CQ15572 869 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-214ENST00000575431 CCDC178Q5BJE1 867 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 RNF20Q5VTR2 975 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 LPAR1Q92633 364 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 TTC14Q96N46 770 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 PARK7Q99497 189 aaKnown RBP11.31□□□□□ -0.6
CCDC40-214ENST00000575431 ANO2Q9NQ90 1003 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 TOMM22Q9NS69 142 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 TCP11L1Q9NUJ3 509 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-214ENST00000575431 LOC285556D6RIA3 1793 aa11.31□□□□□ -0.6
CCDC40-214ENST00000575431 GREB1LQ9C091 1923 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-214ENST00000575431 IGKV6D-41A0A0C4DH26 115 aa11.3□□□□□ -0.6
CCDC40-214ENST00000575431 TTLL1O95922 423 aa11.3□□□□□ -0.6
CCDC40-214ENST00000575431 EEF2P13639 858 aaKnown RBP11.3□□□□□ -0.6
CCDC40-214ENST00000575431 SHROOM1Q2M3G4 852 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-214ENST00000575431 GPAT2Q6NUI2 795 aa11.3□□□□□ -0.6
CCDC40-214ENST00000575431 FAM43AQ8N2R8 423 aa11.3□□□□□ -0.6
CCDC40-214ENST00000575431 MKL1Q969V6 931 aa11.3□□□□□ -0.6
CCDC40-214ENST00000575431 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.3□□□□□ -0.6
CCDC40-214ENST00000575431 LSG1Q9H089 658 aaKnown RBP11.3□□□□□ -0.6
CCDC40-214ENST00000575431 MTMR4Q9NYA4 1195 aa11.3□□□□□ -0.6
CCDC40-214ENST00000575431 RBM8AQ9Y5S9 174 aaKnown RBP11.3□□□□□ -0.6
CCDC40-214ENST00000575431 A0A1W2PRG0 241 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 FOXN1O15353 648 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 TLR2O60603 784 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 CYP21A2P08686 494 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 NECTIN1Q15223 517 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 RRP12Q5JTH9 1297 aaKnown RBP11.29□□□□□ -0.6
CCDC40-214ENST00000575431 IQCA1Q86XH1 822 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 SIAH1Q8IUQ4 282 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 TBC1D10CQ8IV04 446 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 ACER1Q8TDN7 264 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 GTF3C2Q8WUA4 911 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-214ENST00000575431 CEP95Q96GE4 821 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 NBPF3Q9H094 633 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 VCPKMTQ9H867 229 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 GOPCQ9HD26 462 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 PRDM10Q9NQV6 1147 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 EMILIN3Q9NT22 766 aa11.29□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L15C9J2P7 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L13C9JLJ4 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L11C9JVI0 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L18D6R9N7 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L22D6RA61 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L17D6RBQ6 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L19D6RCP7 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L20D6RJB6 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 GPR25O00155 361 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 WDR46O15213 610 aaKnown RBP11.28□□□□□ -0.6
CCDC40-214ENST00000575431 TBC1D8O95759 1140 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 HSPA8P11142 646 aaKnown RBP11.28□□□□□ -0.6
CCDC40-214ENST00000575431 ZKSCAN1P17029 563 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms