RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PHACTR4Q8IZ21 702 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 BAHD1Q8TBE0 780 aaPredicted RBP7.65□□□□□ -1.18
NUP88-208ENST00000574087 SHDQ96IW2 340 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 KIF2CQ99661 725 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 GTF2IRD1Q9UHL9 959 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 COL17A1Q9UMD9 1497 aaPredicted RBP7.65□□□□□ -1.18
NUP88-208ENST00000574087 CYP26A1O43174 497 aa7.64□□□□□ -1.19
NUP88-208ENST00000574087 EIF6P56537 245 aaKnown RBP7.64□□□□□ -1.19
NUP88-208ENST00000574087 LSRQ86X29 649 aaPredicted RBP7.64□□□□□ -1.19
NUP88-208ENST00000574087 TAB3Q8N5C8 712 aaPredicted RBP7.64□□□□□ -1.19
NUP88-208ENST00000574087 TM9SF2Q99805 663 aa7.64□□□□□ -1.19
NUP88-208ENST00000574087 MKNK2Q9HBH9 465 aa7.64□□□□□ -1.19
NUP88-208ENST00000574087 PRDM5Q9NQX1 630 aaPredicted RBP7.64□□□□□ -1.19
NUP88-208ENST00000574087 MAPK8IP1Q9UQF2 711 aa7.64□□□□□ -1.19
NUP88-208ENST00000574087 U3KQE9 123 aa7.64□□□□□ -1.19
NUP88-208ENST00000574087 UBOX5O94941 541 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 ACRP10323 421 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 POLR2BP30876 1174 aaKnown RBP7.63□□□□□ -1.19
NUP88-208ENST00000574087 HOXA10P31260 410 aaPredicted RBP7.63□□□□□ -1.19
NUP88-208ENST00000574087 DNAJA1P31689 397 aaKnown RBP7.63□□□□□ -1.19
NUP88-208ENST00000574087 CCNFP41002 786 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 OXCT1P55809 520 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 ZNF746Q6NUN9 644 aaPredicted RBP7.63□□□□□ -1.19
NUP88-208ENST00000574087 RUFY4Q6ZNE9 571 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 C22orf34Q6ZV56 151 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 MCF2L2Q86YR7 1114 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 CRBNQ96SW2 442 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 SLC9A7Q96T83 725 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 LRRC4CQ9HCJ2 640 aa7.63□□□□□ -1.19
NUP88-208ENST00000574087 TPX2Q9ULW0 747 aaKnown RBP7.63□□□□□ -1.19
NUP88-208ENST00000574087 RBAK-RBAKDNI3L0D1 243 aa7.62□□□□□ -1.19
NUP88-208ENST00000574087 GBP1P32455 592 aa7.62□□□□□ -1.19
NUP88-208ENST00000574087 ETV3P41162 512 aa7.62□□□□□ -1.19
NUP88-208ENST00000574087 OR6P1Q8NGX9 317 aa7.62□□□□□ -1.19
NUP88-208ENST00000574087 CPLX3Q8WVH0 158 aa7.62□□□□□ -1.19
NUP88-208ENST00000574087 VWCEQ96DN2 955 aa7.62□□□□□ -1.19
NUP88-208ENST00000574087 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.62□□□□□ -1.196e-6■■□□□ 11.7
NUP88-208ENST00000574087 ZC3H7BQ9UGR2 993 aaKnown RBP7.62□□□□□ -1.19
NUP88-208ENST00000574087 COBLO75128 1261 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 MED26O95402 600 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 ZNF865P0CJ78 1059 aaPredicted RBP7.61□□□□□ -1.19
NUP88-208ENST00000574087 CYP7A1P22680 504 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 GUCY2CP25092 1073 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 MSMPQ1L6U9 139 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 SFRP5Q5T4F7 317 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 INTS5Q6P9B9 1019 aaKnown RBP7.61□□□□□ -1.19
NUP88-208ENST00000574087 FAM181AQ8N9Y4 354 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 COX4I2Q96KJ9 171 aa7.61□□□□□ -1.19
NUP88-208ENST00000574087 PRR33A8MZF0 331 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 GRIK1P39086 918 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 CD97P48960 835 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 FAM169BQ8N8A8 192 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 RNF141Q8WVD5 230 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 KREMEN1Q96MU8 473 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 PLAGL2Q9UPG8 496 aa7.6□□□□□ -1.19
NUP88-208ENST00000574087 SSBP05455 408 aaKnown RBP eCLIP7.59□□□□□ -1.19
NUP88-208ENST00000574087 CEACAM5P06731 702 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 KIR3DL1P43629 444 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 ZYXQ15942 572 aaKnown RBP7.59□□□□□ -1.19
NUP88-208ENST00000574087 UNC5AQ6ZN44 842 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 TMEM192Q8IY95 271 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 PLD6Q8N2A8 252 aaKnown RBP7.59□□□□□ -1.19
NUP88-208ENST00000574087 C19orf47Q8N9M1 422 aaKnown RBP7.59□□□□□ -1.19
NUP88-208ENST00000574087 ANAPC16Q96DE5 110 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 FBXL18Q96ME1 805 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.59□□□□□ -1.19
NUP88-208ENST00000574087 TNKS2Q9H2K2 1166 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 CAPN6Q9Y6Q1 641 aa7.59□□□□□ -1.19
NUP88-208ENST00000574087 KIAA1324LA8MWY0 1029 aaPredicted RBP7.58□□□□□ -1.2
NUP88-208ENST00000574087 ETFBP38117 255 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 CASP7P55210 303 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 NKPD1Q17RQ9 610 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 ZMYM1Q5SVZ6 1142 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 DTX1Q86Y01 620 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 NETO1Q8TDF5 533 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 Q96M66 194 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 MRVI1Q9Y6F6 885 aa7.58□□□□□ -1.2
NUP88-208ENST00000574087 A0A1W2PQH9 124 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 GNAT3A8MTJ3 354 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 CBX7O95931 251 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 SPINK2P20155 84 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 SSTR4P31391 388 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 IFI16Q16666 785 aaKnown RBP7.57□□□□□ -1.2
NUP88-208ENST00000574087 ARHGAP27Q6ZUM4 889 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 TTC6Q86TZ1 520 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 SPACA3Q8IXA5 215 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 MFSD4AQ8N468 514 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 SLC6A18Q96N87 628 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 ASPNQ9BXN1 380 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 ZNF408Q9H9D4 720 aa7.57□□□□□ -1.2
NUP88-208ENST00000574087 LTBP3Q9NS15 1303 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 LRRN2O75325 713 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 CLEC3AO75596 197 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 ITIH2P19823 946 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 TNK2Q07912 1038 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 NBPF12Q5TAG4 269 aaPredicted RBP7.56□□□□□ -1.2
NUP88-208ENST00000574087 TANGO6Q9C0B7 1094 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 SUCOQ9UBS9 1254 aaKnown RBP7.56□□□□□ -1.2
NUP88-208ENST00000574087 PRKAG3Q9UGI9 489 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 SNX11Q9Y5W9 270 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms