RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 SHISA4Q96DD7 197 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 ADD3Q9UEY8 706 aaKnown RBP17.78■□□□□ 0.44
NUP88-207ENST00000573584 TNKSO95271 1327 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 CUL4BQ13620 913 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 EARS2Q5JPH6 523 aaKnown RBP17.78■□□□□ 0.44
NUP88-207ENST00000573584 ZNF34Q8IZ26 560 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 ZSWIM4Q9H7M6 989 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 CALCOCO1Q9P1Z2 691 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 hCG_1642624A0A1W2PR95 340 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 KRT2P35908 639 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 TXLNAP40222 546 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 SMC1AQ14683 1233 aaKnown RBP17.78■□□□□ 0.44
NUP88-207ENST00000573584 PPP2R5BQ15173 497 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 SH3RF1Q7Z6J0 888 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 SMYD4Q8IYR2 804 aaPredicted RBP17.78■□□□□ 0.44
NUP88-207ENST00000573584 ESR2Q92731 530 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 CTAGE1Q96RT6 745 aa17.78■□□□□ 0.44
NUP88-207ENST00000573584 ZCCHC17Q9NP64 241 aaKnown RBP17.78■□□□□ 0.44
NUP88-207ENST00000573584 KIF5CO60282 957 aa17.77■□□□□ 0.44
NUP88-207ENST00000573584 SEC23AQ15436 765 aa17.77■□□□□ 0.44
NUP88-207ENST00000573584 FILIP1LQ4L180 1135 aa17.77■□□□□ 0.44
NUP88-207ENST00000573584 SDR42E1Q8WUS8 393 aa17.77■□□□□ 0.44
NUP88-207ENST00000573584 TIAM2Q8IVF5 1701 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 MYH3P11055 1940 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 PRDM1O75626 825 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 OAS2P29728 719 aaKnown RBP17.77■□□□□ 0.43
NUP88-207ENST00000573584 PKN1Q16512 942 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 CDKAL1Q5VV42 579 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 GSDMAQ96QA5 445 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 PHF20Q9BVI0 1012 aa17.77■□□□□ 0.43
NUP88-207ENST00000573584 A0A0U1RQJ8 604 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 CYP7A1P22680 504 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 PBX1P40424 430 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 JAKMIP3Q5VZ66 844 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 ATRIPQ8WXE1 791 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 FERMT2Q96AC1 680 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 AK7Q96M32 723 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 V9GY48 417 aaPredicted RBP17.76■□□□□ 0.43
NUP88-207ENST00000573584 RTL9Q8NET4 1388 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 SOS2Q07890 1332 aaPredicted RBP17.76■□□□□ 0.43
NUP88-207ENST00000573584 CHMP4BP1P59074 171 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 DPYDQ12882 1025 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 FUT8Q9BYC5 575 aa17.76■□□□□ 0.43
NUP88-207ENST00000573584 PPP1R3GB7ZBB8 358 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 CASP14P31944 242 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 SUSD4Q5VX71 490 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 SRGAP1Q7Z6B7 1085 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 CHD4Q14839 1912 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 SMIM22K7EJ46 135 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 MFAP3LO75121 409 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 IL6STP40189 918 aaPredicted RBP17.75■□□□□ 0.43
NUP88-207ENST00000573584 ZNF174Q15697 407 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 WNT7AO00755 349 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 SEMA3EO15041 775 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 BMP15O95972 392 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 ZNF569Q5MCW4 686 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 RASGRP2Q7LDG7 609 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 ADGRA1Q86SQ6 560 aa17.75■□□□□ 0.43
NUP88-207ENST00000573584 ENAHQ8N8S7 591 aaPredicted RBP17.75■□□□□ 0.43
NUP88-207ENST00000573584 PUF60Q9UHX1 559 aaKnown RBP17.75■□□□□ 0.43
NUP88-207ENST00000573584 IQSEC3Q9UPP2 1182 aaPredicted RBP17.75■□□□□ 0.43
NUP88-207ENST00000573584 CCDC151A5D8V7 595 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 PRPF3O43395 683 aaKnown RBP17.74■□□□□ 0.43
NUP88-207ENST00000573584 LONRF2Q1L5Z9 754 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 CATIPQ7Z7H3 387 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 CNGA4Q8IV77 575 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 STAMQ92783 540 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 ZSCAN10Q96SZ4 725 aaPredicted RBP17.74■□□□□ 0.43
NUP88-207ENST00000573584 ABCF2Q9UG63 623 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 CDC23Q9UJX2 597 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 FUT2Q10981 343 aa17.74■□□□□ 0.43
NUP88-207ENST00000573584 PLEKHA8P1O95397 391 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 GYPCP04921 128 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 IGHMBP2P38935 993 aaKnown RBP17.73■□□□□ 0.43
NUP88-207ENST00000573584 FXR1P51114 621 aaKnown RBP eCLIP17.73■□□□□ 0.43
NUP88-207ENST00000573584 HNRNPH2P55795 449 aaKnown RBP17.73■□□□□ 0.43
NUP88-207ENST00000573584 ST5P78524 1137 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 BRD3Q15059 726 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 IFIT1BQ5T764 474 aaKnown RBP17.73■□□□□ 0.43
NUP88-207ENST00000573584 CEP112Q8N8E3 955 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 BRMS1Q9HCU9 246 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 ANAPC4Q9UJX5 808 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 MAGEB6P1A0A0J9YX57 407 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 COBLO75128 1261 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 CCT6AP40227 531 aaKnown RBP17.73■□□□□ 0.43
NUP88-207ENST00000573584 KIF4BQ2VIQ3 1234 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 CTNND2Q9UQB3 1225 aa17.73■□□□□ 0.43
NUP88-207ENST00000573584 NOM1Q5C9Z4 860 aaKnown RBP17.72■□□□□ 0.43
NUP88-207ENST00000573584 CCDC51Q96ER9 411 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 LRP5O75197 1615 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 PTGDRQ13258 359 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 TTC38Q5R3I4 469 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 NEK11Q8NG66 645 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 BCL9O00512 1426 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 DOCK2Q92608 1830 aa17.72■□□□□ 0.43
NUP88-207ENST00000573584 CTAGE9A4FU28 777 aa17.71■□□□□ 0.43
NUP88-207ENST00000573584 N4BP3O15049 544 aa17.71■□□□□ 0.43
NUP88-207ENST00000573584 GPS2Q13227 327 aa17.71■□□□□ 0.43
NUP88-207ENST00000573584 CCDC152Q4G0S7 254 aa17.71■□□□□ 0.43
NUP88-207ENST00000573584 BLZF1Q9H2G9 400 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms