RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 KIAA1683Q9H0B3 1180 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 ARHGEF10LQ9HCE6 1279 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 RNF186Q9NXI6 227 aa26.03■■□□□ 1.76
CLN3-234ENST00000568472 IGF2BP3O00425 579 aaKnown RBP eCLIP26.02■■□□□ 1.76
CLN3-234ENST00000568472 TSPY3P0CV98 308 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 TSPY8P0CW00 308 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 ICA1Q05084 483 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 FEZ1Q99689 392 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 CFHR5Q9BXR6 569 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 LSG1Q9H089 658 aaKnown RBP26.02■■□□□ 1.76
CLN3-234ENST00000568472 ANO2Q9NQ90 1003 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 TMOD4Q9NZQ9 345 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 SLC45A1Q9Y2W3 748 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 LAMB1P07942 1786 aa26.02■■□□□ 1.76
CLN3-234ENST00000568472 BTBD19C9JJ37 291 aa26.01■■□□□ 1.75
CLN3-234ENST00000568472 HSPA1AP0DMV8 641 aaKnown RBP26.01■■□□□ 1.75
CLN3-234ENST00000568472 HSPA1BP0DMV9 641 aaKnown RBP26.01■■□□□ 1.75
CLN3-234ENST00000568472 TFAP4Q01664 338 aa26.01■■□□□ 1.75
CLN3-234ENST00000568472 MTMR2Q13614 643 aa26.01■■□□□ 1.75
CLN3-234ENST00000568472 MOGSQ13724 837 aa26.01■■□□□ 1.75
CLN3-234ENST00000568472 USP17L2Q6R6M4 530 aa26.01■■□□□ 1.75
CLN3-234ENST00000568472 PLIN4Q96Q06 1357 aa26■■□□□ 1.75
CLN3-234ENST00000568472 TSPY2A6NKD2 308 aa26■■□□□ 1.75
CLN3-234ENST00000568472 TRPA1O75762 1119 aa26■■□□□ 1.75
CLN3-234ENST00000568472 PABPC4Q13310 644 aaKnown RBP eCLIP26■■□□□ 1.75
CLN3-234ENST00000568472 GADL1Q6ZQY3 521 aa26■■□□□ 1.75
CLN3-234ENST00000568472 GNL3Q9BVP2 549 aaKnown RBP eCLIP26■■□□□ 1.75
CLN3-234ENST00000568472 CNNM2Q9H8M5 875 aa26■■□□□ 1.75
CLN3-234ENST00000568472 TOMM22Q9NS69 142 aa26■■□□□ 1.75
CLN3-234ENST00000568472 NYAP2Q9P242 653 aa26■■□□□ 1.75
CLN3-234ENST00000568472 RANBP6O60518 1105 aaKnown RBP25.99■■□□□ 1.75
CLN3-234ENST00000568472 EIF5BO60841 1220 aaKnown RBP25.99■■□□□ 1.75
CLN3-234ENST00000568472 HMGCS2P54868 508 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 ESR2Q92731 530 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 C12orf42Q96LP6 360 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 NBPF3Q9H094 633 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 SYNPO2Q9UMS6 1093 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 AGTPBP1Q9UPW5 1226 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 TMX2Q9Y320 296 aa25.99■■□□□ 1.75
CLN3-234ENST00000568472 RBM8AQ9Y5S9 174 aaKnown RBP25.99■■□□□ 1.75
CLN3-234ENST00000568472 ATAD5Q96QE3 1844 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 IGKV6D-41A0A0C4DH26 115 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 REC8O95072 547 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 CTCFP49711 727 aaPredicted RBP25.98■■□□□ 1.75
CLN3-234ENST00000568472 GPAT2Q6NUI2 795 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 TBC1D10CQ8IV04 446 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 FAM43AQ8N2R8 423 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 ACER1Q8TDN7 264 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 KRT23Q9C075 422 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 INCENPQ9NQS7 918 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 GTF3C3Q9Y5Q9 886 aa25.98■■□□□ 1.75
CLN3-234ENST00000568472 PDHXO00330 501 aa25.97■■□□□ 1.75
CLN3-234ENST00000568472 EEF2P13639 858 aaKnown RBP25.97■■□□□ 1.75
CLN3-234ENST00000568472 FAM47AQ5JRC9 791 aa25.97■■□□□ 1.75
CLN3-234ENST00000568472 RRP12Q5JTH9 1297 aaKnown RBP25.97■■□□□ 1.75
CLN3-234ENST00000568472 SIAH1Q8IUQ4 282 aa25.97■■□□□ 1.75
CLN3-234ENST00000568472 ZFYVE28Q9HCC9 887 aa25.97■■□□□ 1.75
CLN3-234ENST00000568472 TCP11L1Q9NUJ3 509 aa25.97■■□□□ 1.75
CLN3-234ENST00000568472 MTMR4Q9NYA4 1195 aa25.97■■□□□ 1.75
CLN3-234ENST00000568472 PHIPQ8WWQ0 1821 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 EPB41L2O43491 1005 aaKnown RBP25.96■■□□□ 1.75
CLN3-234ENST00000568472 TTLL1O95922 423 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 CYP21A2P08686 494 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 TRDNQ13061 729 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 NOM1Q5C9Z4 860 aaKnown RBP25.96■■□□□ 1.75
CLN3-234ENST00000568472 RNF20Q5VTR2 975 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 LPAR1Q92633 364 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 MKL1Q969V6 931 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 EMILIN3Q9NT22 766 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 PNMA3Q9UL41 463 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 TACC3Q9Y6A5 838 aa25.96■■□□□ 1.75
CLN3-234ENST00000568472 A0A1W2PRG0 241 aa25.95■■□□□ 1.74
CLN3-234ENST00000568472 HOXA7P31268 230 aaPredicted RBP25.95■■□□□ 1.74
CLN3-234ENST00000568472 TAF1CQ15572 869 aaPredicted RBP25.95■■□□□ 1.74
CLN3-234ENST00000568472 CCDC178Q5BJE1 867 aa25.95■■□□□ 1.74
CLN3-234ENST00000568472 CEP95Q96GE4 821 aa25.95■■□□□ 1.74
CLN3-234ENST00000568472 FOXN1O15353 648 aa25.94■■□□□ 1.74
CLN3-234ENST00000568472 ATP2B2Q01814 1243 aa25.94■■□□□ 1.74
CLN3-234ENST00000568472 NECTIN1Q15223 517 aa25.94■■□□□ 1.74
CLN3-234ENST00000568472 PARK7Q99497 189 aaKnown RBP25.94■■□□□ 1.74
CLN3-234ENST00000568472 GOPCQ9HD26 462 aa25.94■■□□□ 1.74
CLN3-234ENST00000568472 CLIP2Q9UDT6 1046 aa25.94■■□□□ 1.74
CLN3-234ENST00000568472 MYH8P13535 1937 aa25.93■■□□□ 1.74
CLN3-234ENST00000568472 OSBPP22059 807 aa25.93■■□□□ 1.74
CLN3-234ENST00000568472 IQCA1Q86XH1 822 aa25.93■■□□□ 1.74
CLN3-234ENST00000568472 TTC14Q96N46 770 aa25.93■■□□□ 1.74
CLN3-234ENST00000568472 VCPKMTQ9H867 229 aa25.93■■□□□ 1.74
CLN3-234ENST00000568472 NOVP48745 357 aa25.92■■□□□ 1.74
CLN3-234ENST00000568472 CRHR2Q13324 411 aa25.92■■□□□ 1.74
CLN3-234ENST00000568472 ZYXQ15942 572 aaKnown RBP25.92■■□□□ 1.74
CLN3-234ENST00000568472 TREML2Q5T2D2 321 aa25.92■■□□□ 1.74
CLN3-234ENST00000568472 NEDD4P46934 1319 aa25.91■■□□□ 1.74
CLN3-234ENST00000568472 TBC1D8O95759 1140 aa25.91■■□□□ 1.74
CLN3-234ENST00000568472 CREB3L3Q68CJ9 461 aa25.91■■□□□ 1.74
CLN3-234ENST00000568472 CLEC10AQ8IUN9 316 aa25.91■■□□□ 1.74
CLN3-234ENST00000568472 IL17RBQ9NRM6 502 aa25.91■■□□□ 1.74
CLN3-234ENST00000568472 PCNTO95613 3336 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L15C9J2P7 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L13C9JLJ4 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L11C9JVI0 530 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms