RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 TXNRD2Q9NNW7 524 aa21.3■■□□□ 1
NME3-205ENST00000563854 PCDHB15Q9Y5E8 787 aa21.3■■□□□ 1
NME3-205ENST00000563854 SLC4A4Q9Y6R1 1079 aa21.3■■□□□ 1
NME3-205ENST00000563854 CYP2D7A0A087X1C5 515 aa21.29■■□□□ 1
NME3-205ENST00000563854 USP14P54578 494 aa21.29■■□□□ 1
NME3-205ENST00000563854 GPRC5AQ8NFJ5 357 aa21.29■■□□□ 1
NME3-205ENST00000563854 NKX2-3Q8TAU0 364 aa21.29■■□□□ 1
NME3-205ENST00000563854 PXYLP1Q8TE99 480 aa21.29■■□□□ 1
NME3-205ENST00000563854 KIAA1683Q9H0B3 1180 aa21.29■■□□□ 1
NME3-205ENST00000563854 ATP8A2Q9NTI2 1148 aa21.29■■□□□ 1
NME3-205ENST00000563854 BAZ2AQ9UIF9 1905 aaKnown RBP21.29■■□□□ 1
NME3-205ENST00000563854 USP17L15C9J2P7 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L13C9JLJ4 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L11C9JVI0 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L18D6R9N7 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L22D6RA61 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L17D6RBQ6 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L19D6RCP7 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L20D6RJB6 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 GJB1P08034 283 aa21.28■■□□□ 1
NME3-205ENST00000563854 VCAM1P19320 739 aa21.28■■□□□ 1
NME3-205ENST00000563854 GUCY1A2P33402 732 aa21.28■■□□□ 1
NME3-205ENST00000563854 USP17L24Q0WX57 530 aa21.28■■□□□ 1
NME3-205ENST00000563854 C12orf42Q96LP6 360 aa21.28■■□□□ 1
NME3-205ENST00000563854 PUS7LQ9H0K6 701 aaKnown RBP21.28■■□□□ 1
NME3-205ENST00000563854 CWC22Q9HCG8 908 aaKnown RBP21.28■■□□□ 1
NME3-205ENST00000563854 GJA8P48165 433 aa21.27■■□□□ 1
NME3-205ENST00000563854 ERVK-9P63128 1117 aa21.27■■□□□ 1
NME3-205ENST00000563854 ERVK-24P63145 666 aa21.27■■□□□ 1
NME3-205ENST00000563854 CRBNQ96SW2 442 aa21.27■■□□□ 1
NME3-205ENST00000563854 RBPJLQ9UBG7 517 aa21.27■■□□□ 1
NME3-205ENST00000563854 SWAP70Q9UH65 585 aa21.27■■□□□ 1
NME3-205ENST00000563854 MYH8P13535 1937 aa21.26■□□□□ 0.99
NME3-205ENST00000563854 USP17L12C9JPN9 530 aa21.26■□□□□ 0.99
NME3-205ENST00000563854 USP17L21D6R901 530 aa21.26■□□□□ 0.99
NME3-205ENST00000563854 SMIM22K7EJ46 135 aa21.26■□□□□ 0.99
NME3-205ENST00000563854 CLEC10AQ8IUN9 316 aa21.26■□□□□ 0.99
NME3-205ENST00000563854 KBTBD3Q8NAB2 608 aa21.26■□□□□ 0.99
NME3-205ENST00000563854 U2AF1L4Q8WU68 220 aaKnown RBP21.26■□□□□ 0.99
NME3-205ENST00000563854 GTF3C2Q8WUA4 911 aaPredicted RBP21.26■□□□□ 0.99
NME3-205ENST00000563854 RPAP3Q9H6T3 665 aaPredicted RBP21.26■□□□□ 0.99
NME3-205ENST00000563854 AKR1B1P15121 316 aa21.25■□□□□ 0.99
NME3-205ENST00000563854 CYP2B6P20813 491 aa21.25■□□□□ 0.99
NME3-205ENST00000563854 WDR78Q5VTH9 848 aa21.25■□□□□ 0.99
NME3-205ENST00000563854 TMEM179Q6ZVK1 233 aa21.25■□□□□ 0.99
NME3-205ENST00000563854 DOCK3Q8IZD9 2030 aa21.25■□□□□ 0.99
NME3-205ENST00000563854 PORCNQ9H237 461 aa21.25■□□□□ 0.99
NME3-205ENST00000563854 HMGCRP04035 888 aa21.24■□□□□ 0.99
NME3-205ENST00000563854 Q3C1V9 767 aa21.24■□□□□ 0.99
NME3-205ENST00000563854 C12orf60Q5U649 245 aa21.24■□□□□ 0.99
NME3-205ENST00000563854 CATSPERGQ6ZRH7 1159 aa21.24■□□□□ 0.99
NME3-205ENST00000563854 DEFB118Q96PH6 123 aa21.24■□□□□ 0.99
NME3-205ENST00000563854 GJD2Q9UKL4 321 aa21.24■□□□□ 0.99
NME3-205ENST00000563854 A0A1W2PRG0 241 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 MAPK4P31152 587 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 CDK8P49336 464 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 ICA1Q05084 483 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 STK11IPQ8N1F8 1099 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 OTUD7AQ8TE49 926 aaPredicted RBP21.23■□□□□ 0.99
NME3-205ENST00000563854 SOCS4Q8WXH5 440 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 NUDT12Q9BQG2 462 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 TANGO6Q9C0B7 1094 aa21.23■□□□□ 0.99
NME3-205ENST00000563854 ZBTB47Q9UFB7 747 aaPredicted RBP21.23■□□□□ 0.99
NME3-205ENST00000563854 PLXNB2O15031 1838 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 FARP2O94887 1054 aaPredicted RBP21.22■□□□□ 0.99
NME3-205ENST00000563854 TFRCP02786 760 aaKnown RBP21.22■□□□□ 0.99
NME3-205ENST00000563854 ATP2B2Q01814 1243 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 TRIM32Q13049 653 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 CTR9Q6PD62 1173 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 POTEEQ6S8J3 1075 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 GPR142Q7Z601 462 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 APPBP2Q92624 585 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.22■□□□□ 0.991e-12■■□□□ 11.8
NME3-205ENST00000563854 ARHGEF10LQ9HCE6 1279 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 RABGAP1Q9Y3P9 1069 aa21.22■□□□□ 0.99
NME3-205ENST00000563854 ERC2O15083 957 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 RNF113AO15541 343 aaKnown RBP21.21■□□□□ 0.99
NME3-205ENST00000563854 CNMDO75829 334 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 SGPL1O95470 568 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 CCNA1P78396 465 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 SAMD1Q6SPF0 538 aaPredicted RBP21.21■□□□□ 0.99
NME3-205ENST00000563854 C16orf86Q6ZW13 317 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 PLEKHH3Q7Z736 793 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 TRIB2Q92519 343 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 DPF3Q92784 378 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 OSBP2Q969R2 916 aa21.21■□□□□ 0.99
NME3-205ENST00000563854 STRBPQ96SI9 672 aaKnown RBP21.21■□□□□ 0.99
NME3-205ENST00000563854 ARPP21Q9UBL0 812 aaPredicted RBP21.21■□□□□ 0.99
NME3-205ENST00000563854 SPDYE16A6NNV3 312 aaPredicted RBP21.2■□□□□ 0.98
NME3-205ENST00000563854 SPICE1Q8N0Z3 855 aa21.2■□□□□ 0.98
NME3-205ENST00000563854 CCDC17Q96LX7 622 aa21.2■□□□□ 0.98
NME3-205ENST00000563854 FSD1Q9BTV5 496 aa21.2■□□□□ 0.98
NME3-205ENST00000563854 BTBD7Q9P203 1132 aa21.2■□□□□ 0.98
NME3-205ENST00000563854 TTC41PQ6P2S7 1318 aa21.2■□□□□ 0.98
NME3-205ENST00000563854 MINDY4BA8MYZ0 360 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 M0R2C6 588 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 GPAA1O43292 621 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 RAD21O60216 631 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 APPP05067 770 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 ZFYP08048 801 aaPredicted RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms