RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 IKQ13123 557 aaPredicted RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 PRR16Q569H4 304 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 AIDAQ96BJ3 306 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 IFIH1Q9BYX4 1025 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 SLC40A1Q9NP59 571 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 TRPC6Q9Y210 931 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 PFKFB2O60825 505 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 GFAPP14136 432 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 IL9RQ01113 521 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 KLC3Q6P597 504 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ARHGEF18Q6ZSZ5 1173 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ST7Q9NRC1 585 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 MCF2LO15068 1137 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 ZCCHC17Q9NP64 241 aaKnown RBP6.91□□□□□ -1.3
CLK3-212ENST00000563418 NFE2L3Q9Y4A8 694 aa6.91□□□□□ -1.3
CLK3-212ENST00000563418 DISP3Q9P2K9 1392 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 NR1I2O75469 434 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 GSCP56915 257 aaPredicted RBP6.9□□□□□ -1.3
CLK3-212ENST00000563418 ATP2A3Q93084 1043 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 TRAPPC9Q96Q05 1148 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 LARP6Q9BRS8 491 aaKnown RBP6.9□□□□□ -1.3
CLK3-212ENST00000563418 KCNF1Q9H3M0 494 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 ATG3Q9NT62 314 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 MAFGO15525 162 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 CUTAO60888 179 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 FAM107AO95990 144 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 HOXA7P31268 230 aaPredicted RBP6.9□□□□□ -1.3
CLK3-212ENST00000563418 PLA2G4AP47712 749 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 SEL1L2Q5TEA6 688 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 CCDC84Q86UT8 332 aaPredicted RBP6.9□□□□□ -1.3
CLK3-212ENST00000563418 UBL4BQ8N7F7 174 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 MAIP1Q8WWC4 291 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 TACC3Q9Y6A5 838 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 A0A087WZG4 1122 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 TCERG1LQ5VWI1 586 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 KCTD16Q68DU8 428 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 PRPF38AQ8NAV1 312 aaKnown RBP6.9□□□□□ -1.3
CLK3-212ENST00000563418 TEKT4Q8WW24 435 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 TBC1D5Q92609 795 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 NRBF2Q96F24 287 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 NEUROD6Q96NK8 337 aa6.9□□□□□ -1.3
CLK3-212ENST00000563418 ANO9A1A5B4 782 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 GSTA1P08263 222 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 GNAT1P11488 350 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 TUBA4AP68366 448 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 NSMCE1Q8WV22 266 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 CSRNP2Q9H175 543 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 POLR3DP05423 398 aaPredicted RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 IARSP41252 1262 aaKnown RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 PKP1Q13835 747 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 Q4G0T1 1027 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 C1orf141Q5JVX7 400 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 EFCAB2Q5VUJ9 269 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 MAGEC3Q8TD91 643 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 ATP6V1G3Q96LB4 118 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 ZNF692Q9BU19 519 aaPredicted RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 TCEAL9Q9UHQ7 104 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 GGA2Q9UJY4 613 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 SYNMO15061 1565 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 ARHGAP31Q2M1Z3 1444 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 PPP1R37O75864 691 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 CRELD2Q6UXH1 353 aaPredicted RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 SYCP3Q8IZU3 236 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 DDX23Q9BUQ8 820 aaKnown RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 CORO1CQ9ULV4 474 aaPredicted RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 ADGBQ8N7X0 1667 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 PARP1P09874 1014 aaKnown RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 KRT2P35908 639 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 TTLL7Q6ZT98 887 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 TBC1D1Q86TI0 1168 aaPredicted RBP6.9□□□□□ -1.31
CLK3-212ENST00000563418 SH2D4AQ9H788 454 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 CC2D2AQ9P2K1 1620 aa6.9□□□□□ -1.31
CLK3-212ENST00000563418 THOC1Q96FV9 657 aaKnown RBP6.89□□□□□ -1.31
CLK3-212ENST00000563418 IL1RAPL2Q9NP60 686 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 CNGB3Q9NQW8 809 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 ZNF711Q9Y462 761 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 TCOF1Q13428 1488 aaKnown RBP6.89□□□□□ -1.31
CLK3-212ENST00000563418 TBC1D8O95759 1140 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 IQCB1Q15051 598 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 RINLQ6ZS11 566 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 TRIM74Q86UV6 250 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 TRIM73Q86UV7 250 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 OR8K1Q8NGG5 319 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 XAB2Q9HCS7 855 aaKnown RBP6.89□□□□□ -1.31
CLK3-212ENST00000563418 STRN3Q13033 797 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 NECAB1Q8N987 351 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 MCM8Q9UJA3 840 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 RBM8AQ9Y5S9 174 aaKnown RBP6.89□□□□□ -1.31
CLK3-212ENST00000563418 PDHA1P08559 390 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 PRAG1Q86YV5 1406 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 TMEM60Q9H2L4 133 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 NOD2Q9HC29 1040 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 PRM3Q9NNZ6 103 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 KCNH3Q9ULD8 1083 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 SLC12A7Q9Y666 1083 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 UGGT2Q9NYU1 1516 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 KDM1AO60341 852 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 KRT9P35527 623 aa6.89□□□□□ -1.31
CLK3-212ENST00000563418 BASP1P80723 227 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms