RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 C7orf61Q8IZ16 206 aa20.44■□□□□ 0.86
HDGFL3-203ENST00000563404 RHPN1Q8TCX5 695 aa20.44■□□□□ 0.86
HDGFL3-203ENST00000563404 GTF3C2Q8WUA4 911 aaPredicted RBP20.44■□□□□ 0.86
HDGFL3-203ENST00000563404 NBPF3Q9H094 633 aa20.44■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L15C9J2P7 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L13C9JLJ4 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L11C9JVI0 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L18D6R9N7 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L22D6RA61 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L17D6RBQ6 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L19D6RCP7 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L20D6RJB6 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 ZKSCAN1P17029 563 aaPredicted RBP20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 USP17L24Q0WX57 530 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 PDE3AQ14432 1141 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 ABCB5Q2M3G0 1257 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 CATSPERGQ6ZRH7 1159 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 TTC6Q86TZ1 520 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 FEZ1Q99689 392 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 KIAA1683Q9H0B3 1180 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 C11orf49Q9H6J7 331 aa20.43■□□□□ 0.86
HDGFL3-203ENST00000563404 A0A1W2PPC1 479 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 PDE6AP16499 860 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 VCAM1P19320 739 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 CCND3P30281 292 aaPredicted RBP20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 GABPAQ06546 454 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 LHX8Q68G74 356 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 TMED8Q6PL24 325 aaPredicted RBP20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 ZMYND8Q9ULU4 1186 aaPredicted RBP20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 RABGAP1Q9Y3P9 1069 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 PFASO15067 1338 aa20.42■□□□□ 0.86
HDGFL3-203ENST00000563404 MAGEB6P1A0A0J9YX57 407 aa20.41■□□□□ 0.86
HDGFL3-203ENST00000563404 RGS2P41220 211 aa20.41■□□□□ 0.86
HDGFL3-203ENST00000563404 SIRT2Q8IXJ6 389 aa20.41■□□□□ 0.86
HDGFL3-203ENST00000563404 TRMT44Q8IYL2 757 aaKnown RBP20.41■□□□□ 0.86
HDGFL3-203ENST00000563404 GDF15Q99988 308 aa20.41■□□□□ 0.86
HDGFL3-203ENST00000563404 BTBD7Q9P203 1132 aa20.41■□□□□ 0.86
HDGFL3-203ENST00000563404 TCRBV5S4A2TA0A5A2 114 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 USP14P54578 494 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 MAP2K5Q13163 448 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 SEPT2Q15019 361 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 SLC9C2Q5TAH2 1124 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 ZBED9Q6R2W3 1325 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 CCAR1Q8IX12 1150 aaKnown RBP20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 EDC3Q96F86 508 aaKnown RBP20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 LRCH3Q96II8 777 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 APBA2Q99767 749 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 FLRT1Q9NZU1 646 aa20.4■□□□□ 0.86
HDGFL3-203ENST00000563404 NAV1Q8NEY1 1877 aa20.39■□□□□ 0.86
HDGFL3-203ENST00000563404 ZNF532Q9HCE3 1301 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 A0A1W2PRG0 241 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 APBB1O00213 710 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 POLR3DP05423 398 aaPredicted RBP20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 COL6A1P12109 1028 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 SYN1P17600 705 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 TTF1Q15361 905 aaPredicted RBP20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 HSP90AB4PQ58FF6 505 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 LBX2Q6XYB7 198 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 RPAP3Q9H6T3 665 aaPredicted RBP20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 CABP5Q9NP86 173 aa20.39■□□□□ 0.85
HDGFL3-203ENST00000563404 SPDYE16A6NNV3 312 aaPredicted RBP20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 GOLIM4O00461 696 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 CYP2D6P10635 497 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 BMP8BP34820 402 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 SLFNL1Q499Z3 407 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 LCORLQ8N3X6 602 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 SDR42E1Q8WUS8 393 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 MCM9Q9NXL9 1143 aa20.38■□□□□ 0.85
HDGFL3-203ENST00000563404 PTPREP23469 700 aa20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 CLASRPQ8N2M8 674 aaKnown RBP20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 SLC44A5Q8NCS7 719 aa20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 KIF1BPQ96EK5 621 aa20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 DNAJC2Q99543 621 aaKnown RBP20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 CRNKL1Q9BZJ0 848 aaKnown RBP20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 DCP1AQ9NPI6 582 aaPredicted RBP20.37■□□□□ 0.85
HDGFL3-203ENST00000563404 SLC15A5A6NIM6 579 aa20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 CCNA1P78396 465 aa20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 KIAA1755Q5JYT7 1200 aa20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 WDR78Q5VTH9 848 aa20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 NPLOC4Q8TAT6 608 aa20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 CWC22Q9HCG8 908 aaKnown RBP20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 ZBTB40Q9NUA8 1239 aa20.36■□□□□ 0.85
HDGFL3-203ENST00000563404 SMIM22K7EJ46 135 aa20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 MAGEA10P43363 369 aaPredicted RBP20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 GRB14Q14449 540 aa20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 LRRC26Q2I0M4 334 aa20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 RPAP2Q8IXW5 612 aaPredicted RBP20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 BCL11AQ9H165 835 aa20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 ARMT1Q9H993 441 aa20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 COG6Q9Y2V7 657 aa20.35■□□□□ 0.85
HDGFL3-203ENST00000563404 COL6A3P12111 3177 aa20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 DNAH12Q6ZR08 3092 aa20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 MPHOSPH10O00566 681 aaKnown RBP20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 PRKAB2O43741 272 aa20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 IGHA2P01877 340 aa20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 CHGBP05060 677 aa20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 HOXC6P09630 235 aa20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 IFIT2P09913 472 aaKnown RBP20.34■□□□□ 0.85
HDGFL3-203ENST00000563404 SIAH1Q8IUQ4 282 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms