RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 RRP12Q5JTH9 1297 aaKnown RBP11.18□□□□□ -0.62
RTF1-206ENST00000560447 IFIT1BQ5T764 474 aaKnown RBP11.18□□□□□ -0.62
RTF1-206ENST00000560447 KANK3Q6NY19 840 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 CTR9Q6PD62 1173 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 BICDL1Q6ZP65 573 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 ZNF804AQ7Z570 1209 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 DIS3L2Q8IYB7 885 aaKnown RBP11.18□□□□□ -0.62
RTF1-206ENST00000560447 KRI1Q8N9T8 703 aaKnown RBP11.18□□□□□ -0.62
RTF1-206ENST00000560447 ANKS1AQ92625 1134 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 PHKBQ93100 1093 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 PRIMPOLQ96LW4 560 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 TRIM5Q9C035 493 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 SENP2Q9HC62 589 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 BRMS1Q9HCU9 246 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 SRP68Q9UHB9 627 aaKnown RBP11.18□□□□□ -0.62
RTF1-206ENST00000560447 TUBE1Q9UJT0 475 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 CDK5RAP2Q96SN8 1893 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 FOCADQ5VW36 1801 aa11.18□□□□□ -0.62
RTF1-206ENST00000560447 DDX60LQ5H9U9 1706 aaKnown RBP11.18□□□□□ -0.62
RTF1-206ENST00000560447 A0A1B0GVL5 298 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 ATP2B4P23634 1241 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 PLCB2Q00722 1185 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 NOLC1Q14978 699 aaKnown RBP eCLIP11.17□□□□□ -0.62
RTF1-206ENST00000560447 CT47A1Q5JQC4 288 aaPredicted RBP11.17□□□□□ -0.62
RTF1-206ENST00000560447 AMOTL1Q8IY63 956 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 HS6ST3Q8IZP7 471 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 ENAHQ8N8S7 591 aaPredicted RBP11.17□□□□□ -0.62
RTF1-206ENST00000560447 CNBD1Q8NA66 436 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 NKX2-3Q8TAU0 364 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 KIAA1524Q8TCG1 905 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 SDR42E1Q8WUS8 393 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 DCP1AQ9NPI6 582 aaPredicted RBP11.17□□□□□ -0.62
RTF1-206ENST00000560447 FAM13BQ9NYF5 915 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 IMPACTQ9P2X3 320 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 LTBP1Q14766 1721 aa11.17□□□□□ -0.62
RTF1-206ENST00000560447 NRXN2Q9P2S2 1712 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 KIF3CO14782 793 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 BAG3O95817 575 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 RXRAP19793 462 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 PTPREP23469 700 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 TRAPPC10P48553 1259 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 GSDMDP57764 484 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 ST5P78524 1137 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 FUT2Q10981 343 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 TROAPQ12815 778 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 CRY2Q49AN0 593 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 C11orf57Q6ZUT1 292 aaPredicted RBP11.16□□□□□ -0.62
RTF1-206ENST00000560447 DGKHQ86XP1 1220 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 DZIP1Q86YF9 867 aaKnown RBP11.16□□□□□ -0.62
RTF1-206ENST00000560447 RAB11FIP4Q86YS3 637 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 SLF2Q8IX21 1173 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 CTCFLQ8NI51 663 aaPredicted RBP11.16□□□□□ -0.62
RTF1-206ENST00000560447 ZNF384Q8TF68 577 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 PYM1Q9BRP8 204 aaKnown RBP11.16□□□□□ -0.62
RTF1-206ENST00000560447 ZNF287Q9HBT7 754 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 TCP11L1Q9NUJ3 509 aa11.16□□□□□ -0.62
RTF1-206ENST00000560447 IQSEC3Q9UPP2 1182 aaPredicted RBP11.16□□□□□ -0.62
RTF1-206ENST00000560447 QSER1Q2KHR3 1735 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 USP17L12C9JPN9 530 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 USP17L21D6R901 530 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 WDHD1O75717 1129 aaPredicted RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 BBOX1O75936 387 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 LDHBP07195 334 aaKnown RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 HOXA10P31260 410 aaPredicted RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 KIF5BP33176 963 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 KRT2P35908 639 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 GNAQP50148 359 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 DYNLL1P63167 89 aaKnown RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 NFIXQ14938 502 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 TMTC3Q6ZXV5 915 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 DHX40Q8IX18 779 aaKnown RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 CCDC144CPQ8IYA2 1237 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 TRIML1Q8N9V2 468 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 FERMT2Q96AC1 680 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 RBM17Q96I25 401 aaKnown RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 AIFM3Q96NN9 605 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 HS3ST6Q96QI5 342 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 MYL10Q9BUA6 226 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 PHF20Q9BVI0 1012 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 INCENPQ9NQS7 918 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 SH3GLB2Q9NR46 395 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 PODXL2Q9NZ53 605 aa11.15□□□□□ -0.62
RTF1-206ENST00000560447 SRPRBQ9Y5M8 271 aaKnown RBP11.15□□□□□ -0.62
RTF1-206ENST00000560447 MROH7-TTC4A0A0A0MT08 1334 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 AFF2P51816 1311 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 BTBD18B2RXH4 712 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 NPHP1O15259 732 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 IL1R1P14778 569 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 CALML3P27482 149 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 MEX3CQ5U5Q3 659 aaKnown RBP11.14□□□□□ -0.63
RTF1-206ENST00000560447 SHC4Q6S5L8 630 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 KRBA2Q6ZNG9 492 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 FAM196AQ6ZSG2 479 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 DRC7Q8IY82 874 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 TBC1D22AQ8WUA7 517 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 NUP133Q8WUM0 1156 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 RPGRQ92834 1020 aaKnown RBP11.14□□□□□ -0.63
RTF1-206ENST00000560447 CRAMP1Q96RY5 1269 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 TTC12Q9H892 705 aaPredicted RBP11.14□□□□□ -0.63
RTF1-206ENST00000560447 KCND1Q9NSA2 647 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms