RNA–Protein interactions for RNA: ENST00000558855.5

VPS18-203, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS18, Length 1,050 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-203ENST00000558855 SGPL1O95470 568 aa16.44■□□□□ 0.22
VPS18-203ENST00000558855 PABPC4Q13310 644 aaKnown RBP eCLIP16.44■□□□□ 0.22
VPS18-203ENST00000558855 SEPT2Q15019 361 aa16.44■□□□□ 0.22
VPS18-203ENST00000558855 RAB3GAP1Q15042 981 aa16.44■□□□□ 0.22
VPS18-203ENST00000558855 CERKLQ49MI3 558 aaPredicted RBP16.44■□□□□ 0.22
VPS18-203ENST00000558855 DIS3LQ8TF46 1054 aaKnown RBP16.44■□□□□ 0.22
VPS18-203ENST00000558855 COA7Q96BR5 231 aa16.44■□□□□ 0.22
VPS18-203ENST00000558855 DEFB118Q96PH6 123 aa16.44■□□□□ 0.22
VPS18-203ENST00000558855 PCDH10Q9P2E7 1040 aa16.44■□□□□ 0.22
VPS18-203ENST00000558855 MBD4O95243 580 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 ATP5JP18859 108 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 VCAM1P19320 739 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 ERVK-9P63128 1117 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 ERVK-24P63145 666 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 TTF1Q15361 905 aaPredicted RBP16.43■□□□□ 0.22
VPS18-203ENST00000558855 ABCB5Q2M3G0 1257 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 TSHZ3Q63HK5 1081 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 USP17L2Q6R6M4 530 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 HAUS7Q99871 368 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 PAGR1Q9BTK6 254 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.43■□□□□ 0.22
VPS18-203ENST00000558855 GINM1Q9NU53 330 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 MCM9Q9NXL9 1143 aa16.43■□□□□ 0.22
VPS18-203ENST00000558855 FARP2O94887 1054 aaPredicted RBP16.42■□□□□ 0.22
VPS18-203ENST00000558855 MNX1P50219 401 aaPredicted RBP16.42■□□□□ 0.22
VPS18-203ENST00000558855 PDE3AQ14432 1141 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 CCL14Q16627 93 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 TTC6Q86TZ1 520 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 CERS3Q8IU89 383 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 USP6NLQ92738 828 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 FEZ1Q99689 392 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 CRNKL1Q9BZJ0 848 aaKnown RBP16.42■□□□□ 0.22
VPS18-203ENST00000558855 KIAA1683Q9H0B3 1180 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 CRISPLD2Q9H0B8 497 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 BTBD7Q9P203 1132 aa16.42■□□□□ 0.22
VPS18-203ENST00000558855 RANBP2P49792 3224 aaKnown RBP16.41■□□□□ 0.22
VPS18-203ENST00000558855 ZNF236Q9UL36 1845 aa16.41■□□□□ 0.22
VPS18-203ENST00000558855 POLR3DP05423 398 aaPredicted RBP16.41■□□□□ 0.22
VPS18-203ENST00000558855 CYP2B6P20813 491 aa16.41■□□□□ 0.22
VPS18-203ENST00000558855 SIAH1Q8IUQ4 282 aa16.41■□□□□ 0.22
VPS18-203ENST00000558855 HMGCRP04035 888 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 AKR1B1P15121 316 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 FXR1P51114 621 aaKnown RBP eCLIP16.4■□□□□ 0.22
VPS18-203ENST00000558855 TMED8Q6PL24 325 aaPredicted RBP16.4■□□□□ 0.22
VPS18-203ENST00000558855 CATSPERGQ6ZRH7 1159 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 GPR142Q7Z601 462 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 GPRC5AQ8NFJ5 357 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 NKX2-3Q8TAU0 364 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 LRRCC1Q9C099 1032 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 PUS7LQ9H0K6 701 aaKnown RBP16.4■□□□□ 0.22
VPS18-203ENST00000558855 ZNFX1Q9P2E3 1918 aaKnown RBP16.4■□□□□ 0.22
VPS18-203ENST00000558855 TRIOBPQ9H2D6 2365 aa16.4■□□□□ 0.22
VPS18-203ENST00000558855 SZT2Q5T011 3432 aa16.39■□□□□ 0.22
VPS18-203ENST00000558855 MYH4Q9Y623 1939 aa16.39■□□□□ 0.21
VPS18-203ENST00000558855 SPDYE16A6NNV3 312 aaPredicted RBP16.39■□□□□ 0.21
VPS18-203ENST00000558855 MORN1Q5T089 497 aa16.39■□□□□ 0.21
VPS18-203ENST00000558855 MAP3K21Q5TCX8 1036 aa16.39■□□□□ 0.21
VPS18-203ENST00000558855 RPAP3Q9H6T3 665 aaPredicted RBP16.39■□□□□ 0.21
VPS18-203ENST00000558855 FLRT1Q9NZU1 646 aa16.39■□□□□ 0.21
VPS18-203ENST00000558855 USP17L15C9J2P7 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L13C9JLJ4 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L11C9JVI0 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L18D6R9N7 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L22D6RA61 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L17D6RBQ6 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L19D6RCP7 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L20D6RJB6 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 TFRCP02786 760 aaKnown RBP16.38■□□□□ 0.21
VPS18-203ENST00000558855 USP17L24Q0WX57 530 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 CHRDL2Q6WN34 429 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 OTUD7AQ8TE49 926 aaPredicted RBP16.38■□□□□ 0.21
VPS18-203ENST00000558855 DPF3Q92784 378 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 GCC1Q96CN9 775 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 PAWRQ96IZ0 340 aaKnown RBP16.38■□□□□ 0.21
VPS18-203ENST00000558855 PCDHB15Q9Y5E8 787 aa16.38■□□□□ 0.21
VPS18-203ENST00000558855 PLXNA1Q9UIW2 1896 aa16.37■□□□□ 0.21
VPS18-203ENST00000558855 MPHOSPH10O00566 681 aaKnown RBP16.37■□□□□ 0.21
VPS18-203ENST00000558855 CCND3P30281 292 aaPredicted RBP16.37■□□□□ 0.21
VPS18-203ENST00000558855 PRO3102Q9H379 93 aa16.37■□□□□ 0.21
VPS18-203ENST00000558855 DCTPP1Q9H773 170 aa16.37■□□□□ 0.21
VPS18-203ENST00000558855 DNAH12Q6ZR08 3092 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 USP17L12C9JPN9 530 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 USP17L21D6R901 530 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 PRKAR2AP13861 404 aaKnown RBP16.36■□□□□ 0.21
VPS18-203ENST00000558855 CACNB2Q08289 660 aaPredicted RBP16.36■□□□□ 0.21
VPS18-203ENST00000558855 UBE3CQ15386 1083 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 C12orf60Q5U649 245 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 PLEKHH3Q7Z736 793 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 NUDT12Q9BQG2 462 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 CABP5Q9NP86 173 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 RBM27Q9P2N5 1060 aaKnown RBP16.36■□□□□ 0.21
VPS18-203ENST00000558855 RABGAP1Q9Y3P9 1069 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 RPTORQ8N122 1335 aa16.36■□□□□ 0.21
VPS18-203ENST00000558855 MAPK4P31152 587 aa16.35■□□□□ 0.21
VPS18-203ENST00000558855 CDK8P49336 464 aa16.35■□□□□ 0.21
VPS18-203ENST00000558855 USP14P54578 494 aa16.35■□□□□ 0.21
VPS18-203ENST00000558855 CTR9Q6PD62 1173 aa16.35■□□□□ 0.21
VPS18-203ENST00000558855 LBX2Q6XYB7 198 aa16.35■□□□□ 0.21
VPS18-203ENST00000558855 NPLOC4Q8TAT6 608 aa16.35■□□□□ 0.21
VPS18-203ENST00000558855 SOCS4Q8WXH5 440 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms