RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 KRT23Q9C075 422 aa16.21■□□□□ 0.19
SHMT2-234ENST00000557703 TCP11L1Q9NUJ3 509 aa16.21■□□□□ 0.19
SHMT2-234ENST00000557703 TMOD4Q9NZQ9 345 aa16.21■□□□□ 0.19
SHMT2-234ENST00000557703 NYAP2Q9P242 653 aa16.21■□□□□ 0.19
SHMT2-234ENST00000557703 ATAD5Q96QE3 1844 aa16.21■□□□□ 0.19
SHMT2-234ENST00000557703 TRDNQ13061 729 aa16.2■□□□□ 0.18
SHMT2-234ENST00000557703 USP17L2Q6R6M4 530 aa16.2■□□□□ 0.18
SHMT2-234ENST00000557703 SKAP1Q86WV1 359 aa16.2■□□□□ 0.18
SHMT2-234ENST00000557703 BRI3BPQ8WY22 251 aa16.2■□□□□ 0.18
SHMT2-234ENST00000557703 MKL1Q969V6 931 aa16.2■□□□□ 0.18
SHMT2-234ENST00000557703 PNMA3Q9UL41 463 aa16.2■□□□□ 0.18
SHMT2-234ENST00000557703 TRIM75PA6NK02 468 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 TSPY2A6NKD2 308 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 AKR1B1P15121 316 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 GUCY1A2P33402 732 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 ICA1Q05084 483 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 SEPT2Q15019 361 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 TTC14Q96N46 770 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 ZIC5Q96T25 663 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 LSG1Q9H089 658 aaKnown RBP16.19■□□□□ 0.18
SHMT2-234ENST00000557703 IL25Q9H293 177 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 ANO2Q9NQ90 1003 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 RNF186Q9NXI6 227 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 AGTPBP1Q9UPW5 1226 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 TMX2Q9Y320 296 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 PHIPQ8WWQ0 1821 aa16.19■□□□□ 0.18
SHMT2-234ENST00000557703 IGKV6D-41A0A0C4DH26 115 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 TTLL1O95922 423 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 HOXA7P31268 230 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-234ENST00000557703 CTCFP49711 727 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-234ENST00000557703 JAG1P78504 1218 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 TFAP4Q01664 338 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 EVX2Q03828 476 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 CTDSPL2Q05D32 466 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 MKRN3Q13064 507 aaKnown RBP16.18■□□□□ 0.18
SHMT2-234ENST00000557703 IQCA1Q86XH1 822 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 GTF3C2Q8WUA4 911 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-234ENST00000557703 FEZ1Q99689 392 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 PTPN18Q99952 460 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 MTA3Q9BTC8 594 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 ZFYVE28Q9HCC9 887 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 MTMR4Q9NYA4 1195 aa16.18■□□□□ 0.18
SHMT2-234ENST00000557703 BTBD19C9JJ37 291 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 RANBP6O60518 1105 aaKnown RBP16.17■□□□□ 0.18
SHMT2-234ENST00000557703 NOVP48745 357 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 PTH1RQ03431 593 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 MTMR2Q13614 643 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 MOGSQ13724 837 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 TSGA10IPQ3SY00 556 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 PARK7Q99497 189 aaKnown RBP16.17■□□□□ 0.18
SHMT2-234ENST00000557703 GOPCQ9HD26 462 aa16.17■□□□□ 0.18
SHMT2-234ENST00000557703 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-234ENST00000557703 RBM8AQ9Y5S9 174 aaKnown RBP16.17■□□□□ 0.18
SHMT2-234ENST00000557703 PTPRFP10586 1907 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 SMIM22K7EJ46 135 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 IGF2BP3O00425 579 aaKnown RBP eCLIP16.16■□□□□ 0.18
SHMT2-234ENST00000557703 PRDM1O75626 825 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 ZKSCAN1P17029 563 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-234ENST00000557703 HMGCS2P54868 508 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 HAND2P61296 217 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 KRT32Q14532 448 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 NECTIN1Q15223 517 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.16■□□□□ 0.185e-8■■■□□ 18.8
SHMT2-234ENST00000557703 TOMM22Q9NS69 142 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 LAMA4Q16363 1823 aa16.16■□□□□ 0.18
SHMT2-234ENST00000557703 GREB1LQ9C091 1923 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-234ENST00000557703 PDHXO00330 501 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 TRPA1O75762 1119 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 CYP21A2P08686 494 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 HSPA1AP0DMV8 641 aaKnown RBP16.15■□□□□ 0.18
SHMT2-234ENST00000557703 HSPA1BP0DMV9 641 aaKnown RBP16.15■□□□□ 0.18
SHMT2-234ENST00000557703 EEF2P13639 858 aaKnown RBP16.15■□□□□ 0.18
SHMT2-234ENST00000557703 OSBPP22059 807 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 TAF1CQ15572 869 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-234ENST00000557703 IFFO2Q5TF58 517 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 GPAT2Q6NUI2 795 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 GADL1Q6ZQY3 521 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 DGKHQ86XP1 1220 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 SIAH1Q8IUQ4 282 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 NCOA7Q8NI08 942 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 NBPF3Q9H094 633 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 VCPKMTQ9H867 229 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 EMILIN3Q9NT22 766 aa16.15■□□□□ 0.18
SHMT2-234ENST00000557703 USP17L15C9J2P7 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L13C9JLJ4 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L11C9JVI0 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L18D6R9N7 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L22D6RA61 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L17D6RBQ6 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L19D6RCP7 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L20D6RJB6 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 TLR2O60603 784 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 GCLCP48506 637 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-234ENST00000557703 USP17L24Q0WX57 530 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 SART3Q15020 963 aaKnown RBP16.14■□□□□ 0.17
SHMT2-234ENST00000557703 ARHGEF6Q15052 776 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 RCSD1Q6JBY9 416 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 RALYLQ86SE5 291 aaKnown RBP16.14■□□□□ 0.17
SHMT2-234ENST00000557703 TBC1D10CQ8IV04 446 aa16.14■□□□□ 0.17
SHMT2-234ENST00000557703 FAM43AQ8N2R8 423 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms