RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 PAGR1Q9BTK6 254 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 MCM9Q9NXL9 1143 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 TMOD4Q9NZQ9 345 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 RANBP2P49792 3224 aaKnown RBP13.23□□□□□ -0.29
SYNE2-227ENST00000557307 MYH4Q9Y623 1939 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 POLR3DP05423 398 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-227ENST00000557307 ABCB5Q2M3G0 1257 aa13.22□□□□□ -0.29
SYNE2-227ENST00000557307 CERKLQ49MI3 558 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-227ENST00000557307 DIS3LQ8TF46 1054 aaKnown RBP13.22□□□□□ -0.29
SYNE2-227ENST00000557307 TRIB2Q92519 343 aa13.22□□□□□ -0.29
SYNE2-227ENST00000557307 C12orf42Q96LP6 360 aa13.22□□□□□ -0.29
SYNE2-227ENST00000557307 CRNKL1Q9BZJ0 848 aaKnown RBP13.22□□□□□ -0.29
SYNE2-227ENST00000557307 LRRCC1Q9C099 1032 aa13.22□□□□□ -0.29
SYNE2-227ENST00000557307 PUS7LQ9H0K6 701 aaKnown RBP13.22□□□□□ -0.29
SYNE2-227ENST00000557307 ZNF236Q9UL36 1845 aa13.22□□□□□ -0.29
SYNE2-227ENST00000557307 C19orf81C9J6K1 198 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 H0YGN5 161 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 AKR1B1P15121 316 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 VCAM1P19320 739 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 ERVK-9P63128 1117 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 ERVK-24P63145 666 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 UBXN2AP68543 259 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 PABPC4Q13310 644 aaKnown RBP eCLIP13.21□□□□□ -0.29
SYNE2-227ENST00000557307 CCL14Q16627 93 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 USP17L2Q6R6M4 530 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 TTC6Q86TZ1 520 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 OTUD7AQ8TE49 926 aaPredicted RBP13.21□□□□□ -0.29
SYNE2-227ENST00000557307 PXYLP1Q8TE99 480 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 COA7Q96BR5 231 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 DEFB118Q96PH6 123 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 FEZ1Q99689 392 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 PAK6Q9NQU5 681 aaPredicted RBP13.21□□□□□ -0.29
SYNE2-227ENST00000557307 PCDHB15Q9Y5E8 787 aa13.21□□□□□ -0.29
SYNE2-227ENST00000557307 ZNFX1Q9P2E3 1918 aaKnown RBP13.21□□□□□ -0.3
SYNE2-227ENST00000557307 PLXNA1Q9UIW2 1896 aa13.21□□□□□ -0.3
SYNE2-227ENST00000557307 DNAH12Q6ZR08 3092 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 SGPL1O95470 568 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 CYP2B6P20813 491 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 HABP4Q5JVS0 413 aaKnown RBP13.2□□□□□ -0.3
SYNE2-227ENST00000557307 CERS3Q8IU89 383 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 SIAH1Q8IUQ4 282 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 KIAA1683Q9H0B3 1180 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.2□□□□□ -0.3
SYNE2-227ENST00000557307 GINM1Q9NU53 330 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 BTBD7Q9P203 1132 aa13.2□□□□□ -0.3
SYNE2-227ENST00000557307 MPHOSPH10O00566 681 aaKnown RBP13.19□□□□□ -0.3
SYNE2-227ENST00000557307 FARP2O94887 1054 aaPredicted RBP13.19□□□□□ -0.3
SYNE2-227ENST00000557307 MNX1P50219 401 aaPredicted RBP13.19□□□□□ -0.3
SYNE2-227ENST00000557307 CATSPERGQ6ZRH7 1159 aa13.19□□□□□ -0.3
SYNE2-227ENST00000557307 USP6NLQ92738 828 aa13.19□□□□□ -0.3
SYNE2-227ENST00000557307 DCTPP1Q9H773 170 aa13.19□□□□□ -0.3
SYNE2-227ENST00000557307 COLQQ9Y215 455 aaPredicted RBP13.19□□□□□ -0.3
SYNE2-227ENST00000557307 SPDYE16A6NNV3 312 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-227ENST00000557307 HMGCRP04035 888 aa13.18□□□□□ -0.3
SYNE2-227ENST00000557307 TMED8Q6PL24 325 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-227ENST00000557307 GPR142Q7Z601 462 aa13.18□□□□□ -0.3
SYNE2-227ENST00000557307 GPRC5AQ8NFJ5 357 aa13.18□□□□□ -0.3
SYNE2-227ENST00000557307 CRISPLD2Q9H0B8 497 aa13.18□□□□□ -0.3
SYNE2-227ENST00000557307 RPAP3Q9H6T3 665 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-227ENST00000557307 FLRT1Q9NZU1 646 aa13.18□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L15C9J2P7 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L13C9JLJ4 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L12C9JPN9 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L11C9JVI0 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L21D6R901 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L18D6R9N7 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L22D6RA61 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L17D6RBQ6 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L19D6RCP7 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L20D6RJB6 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 M0R2C6 588 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 USP17L24Q0WX57 530 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 UBE3CQ15386 1083 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 MORN1Q5T089 497 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 C12orf60Q5U649 245 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 STK11IPQ8N1F8 1099 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 OSBP2Q969R2 916 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 EPB41L4AQ9HCS5 686 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-227ENST00000557307 CABP5Q9NP86 173 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 ECHDC1Q9NTX5 307 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 SLC4A4Q9Y6R1 1079 aa13.17□□□□□ -0.3
SYNE2-227ENST00000557307 PRKAR2AP13861 404 aaKnown RBP13.16□□□□□ -0.3
SYNE2-227ENST00000557307 CCND3P30281 292 aaPredicted RBP13.16□□□□□ -0.3
SYNE2-227ENST00000557307 CDK8P49336 464 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 RRP1P56182 461 aaKnown RBP13.16□□□□□ -0.3
SYNE2-227ENST00000557307 MAP3K21Q5TCX8 1036 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 CTR9Q6PD62 1173 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 NKX2-3Q8TAU0 364 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 DPF3Q92784 378 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 PAWRQ96IZ0 340 aaKnown RBP13.16□□□□□ -0.3
SYNE2-227ENST00000557307 CRBNQ96SW2 442 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 SEC62Q99442 399 aaKnown RBP13.16□□□□□ -0.3
SYNE2-227ENST00000557307 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.16□□□□□ -0.3
SYNE2-227ENST00000557307 ATP8A2Q9NTI2 1148 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 TRIOBPQ9H2D6 2365 aa13.16□□□□□ -0.3
SYNE2-227ENST00000557307 TFRCP02786 760 aaKnown RBP13.15□□□□□ -0.3
SYNE2-227ENST00000557307 FXR1P51114 621 aaKnown RBP eCLIP13.15□□□□□ -0.3
SYNE2-227ENST00000557307 USP14P54578 494 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 CACNB2Q08289 660 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-227ENST00000557307 CHRDL2Q6WN34 429 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms