RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 IRF5Q13568 498 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 LRIT3Q3SXY7 679 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 SH3BP5LQ7L8J4 393 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 FASTKD5Q7L8L6 764 aaKnown RBP12.45□□□□□ -0.42
SCFD1-220ENST00000556486 ATG9AQ7Z3C6 839 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 WDR66Q8TBY9 1149 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 LPIN2Q92539 896 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 KRTAP3-3Q9BYR6 98 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 KRTAP3-2Q9BYR7 98 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 TBC1D2Q9BYX2 928 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 NBPF3Q9H094 633 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 C11orf49Q9H6J7 331 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 ADGRG1Q9Y653 693 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 PLXNB2O15031 1838 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 SPTBN5Q9NRC6 3674 aaKnown RBP12.44□□□□□ -0.42
SCFD1-220ENST00000556486 ATRNL1Q5VV63 1379 aa12.44□□□□□ -0.42
SCFD1-220ENST00000556486 DDTLA6NHG4 134 aaPredicted RBP12.44□□□□□ -0.42
SCFD1-220ENST00000556486 PICALMQ13492 652 aa12.44□□□□□ -0.42
SCFD1-220ENST00000556486 PADI6Q6TGC4 694 aa12.44□□□□□ -0.42
SCFD1-220ENST00000556486 GUCD1Q96NT3 240 aa12.44□□□□□ -0.42
SCFD1-220ENST00000556486 LRRFIP2Q9Y608 721 aaKnown RBP12.44□□□□□ -0.42
SCFD1-220ENST00000556486 ATAD5Q96QE3 1844 aa12.44□□□□□ -0.42
SCFD1-220ENST00000556486 PFASO15067 1338 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 SALL1Q9NSC2 1324 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 HMGCRP04035 888 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 SLC5A1P13866 664 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 TMEM259Q4ZIN3 620 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 ZNF687Q8N1G0 1237 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 HMX1Q9NP08 348 aaPredicted RBP12.43□□□□□ -0.42
SCFD1-220ENST00000556486 LHX6Q9UPM6 363 aa12.43□□□□□ -0.42
SCFD1-220ENST00000556486 LDHBP07195 334 aaKnown RBP12.42□□□□□ -0.42
SCFD1-220ENST00000556486 CYP2B6P20813 491 aa12.42□□□□□ -0.42
SCFD1-220ENST00000556486 TRIB2Q92519 343 aa12.42□□□□□ -0.42
SCFD1-220ENST00000556486 DDX4Q9NQI0 724 aaKnown RBP12.42□□□□□ -0.42
SCFD1-220ENST00000556486 SMC4Q9NTJ3 1288 aa12.42□□□□□ -0.42
SCFD1-220ENST00000556486 AGTPBP1Q9UPW5 1226 aa12.42□□□□□ -0.42
SCFD1-220ENST00000556486 HDAC5Q9UQL6 1122 aa12.42□□□□□ -0.42
SCFD1-220ENST00000556486 RPTORQ8N122 1335 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 LOC285556D6RIA3 1793 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 UBTFL1P0CB47 393 aaPredicted RBP12.41□□□□□ -0.42
SCFD1-220ENST00000556486 LRRC26Q2I0M4 334 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 ANKLE1Q8NAG6 615 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 CDCA7LQ96GN5 454 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 SIL1Q9H173 461 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 COPRSQ9NQ92 184 aa12.41□□□□□ -0.42
SCFD1-220ENST00000556486 PDS5AQ29RF7 1337 aaKnown RBP12.4□□□□□ -0.42
SCFD1-220ENST00000556486 IL15P40933 162 aaPredicted RBP12.4□□□□□ -0.42
SCFD1-220ENST00000556486 HMGCS2P54868 508 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 ATP2B3Q16720 1220 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 FAM110CQ1W6H9 321 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 PPP2R2DQ66LE6 453 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 CEP126Q9P2H0 1117 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 GJD2Q9UKL4 321 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 SLC45A1Q9Y2W3 748 aa12.4□□□□□ -0.42
SCFD1-220ENST00000556486 FRMPD3Q5JV73 1810 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 CTNND1O60716 968 aaKnown RBP12.39□□□□□ -0.43
SCFD1-220ENST00000556486 PHKA1P46020 1223 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 SPP2Q13103 211 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 MTX1Q13505 466 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 ARHGAP45Q92619 1136 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 API5Q9BZZ5 524 aaKnown RBP12.39□□□□□ -0.43
SCFD1-220ENST00000556486 GNL3LQ9NVN8 582 aaKnown RBP12.39□□□□□ -0.43
SCFD1-220ENST00000556486 LIMD1Q9UGP4 676 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 OGDHLQ9ULD0 1010 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 DENND2AQ9ULE3 1009 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 RFX7Q2KHR2 1363 aa12.39□□□□□ -0.43
SCFD1-220ENST00000556486 GAKO14976 1311 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 CCND3P30281 292 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-220ENST00000556486 MAP3K10Q02779 954 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 CCL14Q16627 93 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 TTC13Q8NBP0 860 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 IDI2Q9BXS1 227 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 ASCC2Q9H1I8 757 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-220ENST00000556486 PNMA3Q9UL41 463 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 NOB1Q9ULX3 412 aaKnown RBP12.38□□□□□ -0.43
SCFD1-220ENST00000556486 CDH23Q9H251 3354 aa12.38□□□□□ -0.43
SCFD1-220ENST00000556486 ENTPD3O75355 529 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 ADORA1P30542 326 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 BTDP43251 543 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 RRP1BQ14684 758 aaKnown RBP12.37□□□□□ -0.43
SCFD1-220ENST00000556486 C6orf132Q5T0Z8 1188 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 DZIP1Q86YF9 867 aaKnown RBP12.37□□□□□ -0.43
SCFD1-220ENST00000556486 ZGPATQ8N5A5 531 aaKnown RBP12.37□□□□□ -0.43
SCFD1-220ENST00000556486 RETREG2Q8NC44 543 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.37□□□□□ -0.43
SCFD1-220ENST00000556486 ABCF2Q9UG63 623 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 MAST2Q6P0Q8 1798 aa12.37□□□□□ -0.43
SCFD1-220ENST00000556486 RARSP54136 660 aaKnown RBP12.36□□□□□ -0.43
SCFD1-220ENST00000556486 CACNB2Q08289 660 aaPredicted RBP12.36□□□□□ -0.43
SCFD1-220ENST00000556486 CCDC102BQ68D86 513 aa12.36□□□□□ -0.43
SCFD1-220ENST00000556486 TXNRD2Q9NNW7 524 aa12.36□□□□□ -0.43
SCFD1-220ENST00000556486 RAPGEFL1Q9UHV5 662 aa12.36□□□□□ -0.43
SCFD1-220ENST00000556486 NDUFB9Q9Y6M9 179 aa12.36□□□□□ -0.43
SCFD1-220ENST00000556486 LTBP2Q14767 1821 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 CCER2I3L3R5 266 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 COL6A1P12109 1028 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 ZKSCAN1P17029 563 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-220ENST00000556486 CAPN2P17655 700 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 GCLCP48506 637 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-220ENST00000556486 RASGRF1Q13972 1273 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms