RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 GAB4Q2WGN9 574 aa7□□□□□ -1.29
SCFD1-218ENST00000556256 BAHD1Q8TBE0 780 aaPredicted RBP7□□□□□ -1.29
SCFD1-218ENST00000556256 ZCCHC4Q9H5U6 513 aa7□□□□□ -1.29
SCFD1-218ENST00000556256 MYOCOSA0A1B0GUC4 107 aa6.99□□□□□ -1.29
SCFD1-218ENST00000556256 FOXD2O60548 495 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-218ENST00000556256 TPP2P29144 1249 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-218ENST00000556256 FBF1Q8TES7 1133 aa6.99□□□□□ -1.29
SCFD1-218ENST00000556256 Q96M66 194 aa6.99□□□□□ -1.29
SCFD1-218ENST00000556256 SETDB2Q96T68 719 aa6.99□□□□□ -1.29
SCFD1-218ENST00000556256 KRTAP17-1Q9BYP8 105 aa6.99□□□□□ -1.29
SCFD1-218ENST00000556256 GFRA2O00451 464 aa6.98□□□□□ -1.29
SCFD1-218ENST00000556256 GIPC1O14908 333 aa6.98□□□□□ -1.29
SCFD1-218ENST00000556256 TIGD5Q53EQ6 642 aa6.98□□□□□ -1.29
SCFD1-218ENST00000556256 IRF2BP1Q8IU81 584 aa6.98□□□□□ -1.29
SCFD1-218ENST00000556256 PDZD8Q8NEN9 1154 aa6.98□□□□□ -1.29
SCFD1-218ENST00000556256 BIN2Q9UBW5 565 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-218ENST00000556256 A0A0G2JLL6 359 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-218ENST00000556256 PEX10O60683 326 aa6.97□□□□□ -1.29
SCFD1-218ENST00000556256 ZGLP1P0C6A0 271 aa6.97□□□□□ -1.29
SCFD1-218ENST00000556256 ZNF605Q86T29 641 aa6.97□□□□□ -1.29
SCFD1-218ENST00000556256 DPH2Q9BQC3 489 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-218ENST00000556256 TJP2Q9UDY2 1190 aa6.97□□□□□ -1.29
SCFD1-218ENST00000556256 MAPK1P28482 360 aa6.96□□□□□ -1.3
SCFD1-218ENST00000556256 ETV3P41162 512 aa6.96□□□□□ -1.3
SCFD1-218ENST00000556256 SV2BQ7L1I2 683 aa6.96□□□□□ -1.3
SCFD1-218ENST00000556256 MRPL41Q8IXM3 137 aaKnown RBP6.96□□□□□ -1.3
SCFD1-218ENST00000556256 LILRA2Q8N149 483 aa6.96□□□□□ -1.3
SCFD1-218ENST00000556256 KCNC2Q96PR1 638 aa6.96□□□□□ -1.3
SCFD1-218ENST00000556256 SLC6A17Q9H1V8 727 aa6.96□□□□□ -1.3
SCFD1-218ENST00000556256 TRIT1Q9H3H1 467 aaKnown RBP6.96□□□□□ -1.3
SCFD1-218ENST00000556256 CNOT6Q9ULM6 557 aaKnown RBP6.96□□□□□ -1.3
SCFD1-218ENST00000556256 SEMA7AO75326 666 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 MAPK8P45983 427 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 EGR3Q06889 387 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 TMEM132EQ6IEE7 984 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 TTBK2Q6IQ55 1244 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 OXR1Q8N573 874 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 MARCH10Q8NA82 808 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-218ENST00000556256 DNAJB8Q8NHS0 232 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 TMEM87BQ96K49 555 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 SGPP1Q9BX95 441 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 ZNF552Q9H707 407 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-218ENST00000556256 GCM1Q9NP62 436 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 DUSP13Q9UII6 198 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 WWC3Q9ULE0 1092 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 YBX2Q9Y2T7 364 aaKnown RBP6.95□□□□□ -1.3
SCFD1-218ENST00000556256 TACC3Q9Y6A5 838 aa6.95□□□□□ -1.3
SCFD1-218ENST00000556256 USP17L7P0C7H9 530 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 SLC6A19Q695T7 634 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 ALG1LQ6GMV1 187 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 GPR62Q9BZJ7 368 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 GPATCH2Q9NW75 528 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 FAM8A1Q9UBU6 413 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 CEP131Q9UPN4 1083 aa6.94□□□□□ -1.3
SCFD1-218ENST00000556256 TEX51A0A1B0GUA7 166 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 FITM1A5D6W6 292 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 PGRP06401 933 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 NR0B2Q15466 257 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 TCERG1LQ5VWI1 586 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 TSPYL5Q86VY4 417 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-218ENST00000556256 INTS4Q96HW7 963 aaKnown RBP6.93□□□□□ -1.3
SCFD1-218ENST00000556256 C12orf49Q9H741 205 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 CWC22Q9HCG8 908 aaKnown RBP6.93□□□□□ -1.3
SCFD1-218ENST00000556256 KCTD3Q9Y597 815 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 PCDHB5Q9Y5E4 795 aa6.93□□□□□ -1.3
SCFD1-218ENST00000556256 TRIM13O60858 407 aa6.92□□□□□ -1.3
SCFD1-218ENST00000556256 SEPT6Q14141 434 aa6.92□□□□□ -1.3
SCFD1-218ENST00000556256 ZNF385BQ569K4 471 aa6.92□□□□□ -1.3
SCFD1-218ENST00000556256 SPG7Q9UQ90 795 aa6.92□□□□□ -1.3
SCFD1-218ENST00000556256 PCDHA11Q9Y5I1 949 aa6.92□□□□□ -1.3
SCFD1-218ENST00000556256 SYN1P17600 705 aa6.91□□□□□ -1.3
SCFD1-218ENST00000556256 PDE6BP35913 854 aa6.91□□□□□ -1.3
SCFD1-218ENST00000556256 FMR1Q06787 632 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCFD1-218ENST00000556256 NFIXQ14938 502 aa6.91□□□□□ -1.3
SCFD1-218ENST00000556256 MCATQ8IVS2 390 aaKnown RBP6.91□□□□□ -1.3
SCFD1-218ENST00000556256 PPP1R13LQ8WUF5 828 aa6.91□□□□□ -1.3
SCFD1-218ENST00000556256 DHX38Q92620 1227 aaKnown RBP6.91□□□□□ -1.3
SCFD1-218ENST00000556256 EBF1Q9UH73 591 aa6.91□□□□□ -1.3
SCFD1-218ENST00000556256 TTF2Q9UNY4 1162 aaKnown RBP6.91□□□□□ -1.3
SCFD1-218ENST00000556256 ADAMTS20P59510 1910 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 LTKP29376 864 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 RPS26P62854 115 aaKnown RBP6.9□□□□□ -1.3
SCFD1-218ENST00000556256 SSPNQ14714 243 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 DBX2Q6ZNG2 339 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 SPPL2CQ8IUH8 684 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 DTWD2Q8NBA8 298 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 SHISA4Q96DD7 197 aa6.9□□□□□ -1.3
SCFD1-218ENST00000556256 PSPNO60542 156 aa6.89□□□□□ -1.31
SCFD1-218ENST00000556256 SNX17Q15036 470 aa6.89□□□□□ -1.31
SCFD1-218ENST00000556256 ACSF2Q96CM8 615 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-218ENST00000556256 KCNH3Q9ULD8 1083 aa6.89□□□□□ -1.31
SCFD1-218ENST00000556256 GNEQ9Y223 722 aaKnown RBP6.89□□□□□ -1.31
SCFD1-218ENST00000556256 LRRN2O75325 713 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 LMNB1P20700 586 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 GALK1P51570 392 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 TMEM151BQ8IW70 566 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 RETREG2Q8NC44 543 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 PANK1Q8TE04 598 aa6.88□□□□□ -1.31
SCFD1-218ENST00000556256 SYTL4Q96C24 671 aaPredicted RBP6.88□□□□□ -1.31
SCFD1-218ENST00000556256 XYLT2Q9H1B5 865 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms