RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 IFNKQ9P0W0 207 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 NLRP1Q9C000 1473 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 E7EVH7 732 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 SH3BP5O60239 455 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 PDE6AP16499 860 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 OSBPP22059 807 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 KMT5BQ4FZB7 885 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 LIN9Q5TKA1 542 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 KRT40Q6A162 431 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 CABP7Q86V35 215 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 GPIHBP1Q8IV16 184 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 PSTPIP2Q9H939 334 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 LZTFL1Q9NQ48 299 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 TBC1D8BQ0IIM8 1120 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 BMS1Q14692 1282 aaKnown RBP9.17□□□□□ -0.94
SYNE2-220ENST00000555612 HS1BP3Q53T59 392 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 SEL1L2Q5TEA6 688 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 IFNL3Q8IZI9 196 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 KIAA1524Q8TCG1 905 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 ZSCAN10Q96SZ4 725 aaPredicted RBP9.17□□□□□ -0.94
SYNE2-220ENST00000555612 VPS16Q9H269 839 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 ATP5JP18859 108 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 TNNI1P19237 187 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 PPP1R21Q6ZMI0 780 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 SESTD1Q86VW0 696 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 ARHGEF25Q86VW2 580 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 FBXO11Q86XK2 927 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 CSGALNACT2Q8N6G5 542 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 FAM204AQ9H8W3 233 aa9.17□□□□□ -0.94
SYNE2-220ENST00000555612 THRAP3Q9Y2W1 955 aaKnown RBP9.17□□□□□ -0.94
SYNE2-220ENST00000555612 SMIM23A6NLE4 172 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 E7EWF7 191 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 POLR2DO15514 142 aaKnown RBP9.16□□□□□ -0.94
SYNE2-220ENST00000555612 MMP10P09238 476 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ZNF654Q8IZM8 581 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 RDH13Q8NBN7 331 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ATP8A2Q9NTI2 1148 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PPP1R2P41236 205 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 YARSP54577 528 aaKnown RBP9.16□□□□□ -0.94
SYNE2-220ENST00000555612 MCF2L2Q86YR7 1114 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 FMNL3Q8IVF7 1028 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 SEC31BQ9NQW1 1179 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 SGSM2O43147 1006 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ZBTB7AO95365 584 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 Q3C1V9 767 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 XKR9Q5GH70 373 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ZBTB8OSQ8IWT0 167 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.16□□□□□ -0.94
SYNE2-220ENST00000555612 AOX1Q06278 1338 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 IFRD2Q12894 506 aaPredicted RBP9.16□□□□□ -0.94
SYNE2-220ENST00000555612 POLA2Q14181 598 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PPP2R5BQ15173 497 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 SPECC1LQ69YQ0 1117 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 MED10Q9BTT4 135 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ZNF521Q96K83 1311 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 FAM170AA1A519 330 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 GDF11O95390 407 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PHKA1P46020 1223 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 MXRA7P84157 204 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PPM1EQ8WY54 764 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 LEMD3Q9Y2U8 911 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PTPRTO14522 1441 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ERBB4Q15303 1308 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ATP2A2P16615 1042 aaKnown RBP9.16□□□□□ -0.94
SYNE2-220ENST00000555612 FAM160A1Q05DH4 1040 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 INF2Q27J81 1249 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PNMA1Q8ND90 353 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 PUS3Q9BZE2 481 aaKnown RBP9.16□□□□□ -0.94
SYNE2-220ENST00000555612 MTUS1Q9ULD2 1270 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 ODF2LQ9ULJ1 636 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 USTQ9Y2C2 406 aa9.16□□□□□ -0.94
SYNE2-220ENST00000555612 CTAGE9A4FU28 777 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 CFAP58Q5T655 872 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 TRMT2AQ8IZ69 625 aaKnown RBP9.15□□□□□ -0.94
SYNE2-220ENST00000555612 TTLL3Q9Y4R7 772 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 PPP2R5DQ14738 602 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 CGNQ9P2M7 1197 aaKnown RBP9.15□□□□□ -0.94
SYNE2-220ENST00000555612 BBOX1O75936 387 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 MYL5Q02045 173 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 PROSER3Q2NL68 480 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 FAM173BQ6P4H8 233 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 DCUN1D2Q6PH85 259 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 TTLL6Q8N841 843 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 STAMQ92783 540 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 RIOK1Q9BRS2 568 aaKnown RBP9.15□□□□□ -0.94
SYNE2-220ENST00000555612 AP5M1Q9H0R1 490 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.15□□□□□ -0.94
SYNE2-220ENST00000555612 C21orf2O43822 256 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 ASIC2Q16515 512 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 CIAPIN1Q6FI81 312 aa9.15□□□□□ -0.94
SYNE2-220ENST00000555612 LLPHQ9BRT6 129 aaKnown RBP9.15□□□□□ -0.94
SYNE2-220ENST00000555612 KLRF2D3W0D1 207 aa9.15□□□□□ -0.95
SYNE2-220ENST00000555612 LRMPQ12912 555 aa9.15□□□□□ -0.95
SYNE2-220ENST00000555612 ATL3Q6DD88 541 aa9.15□□□□□ -0.95
SYNE2-220ENST00000555612 GPKOWQ92917 476 aaPredicted RBP eCLIP9.15□□□□□ -0.95
SYNE2-220ENST00000555612 DSCC1Q9BVC3 393 aa9.15□□□□□ -0.95
SYNE2-220ENST00000555612 APOL6Q9BWW8 343 aa9.15□□□□□ -0.95
SYNE2-220ENST00000555612 ATP2C2O75185 946 aa9.14□□□□□ -0.95
SYNE2-220ENST00000555612 UBXN2AP68543 259 aa9.14□□□□□ -0.95
SYNE2-220ENST00000555612 TMC4Q7Z404 712 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms