RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ANAPC15P60006 121 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 ICA1Q05084 483 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 TRDNQ13061 729 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 TSGA10IPQ3SY00 556 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 RRP12Q5JTH9 1297 aaKnown RBP12.88□□□□□ -0.35
SHMT2-218ENST00000555213 CREB3L3Q68CJ9 461 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 TBC1D10CQ8IV04 446 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 ESR2Q92731 530 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 BEGAINQ9BUH8 593 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 WDR18Q9BV38 432 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 KANSL2Q9H9L4 492 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 ARHGEF10LQ9HCE6 1279 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 KCNH4Q9UQ05 1017 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.88□□□□□ -0.35
SHMT2-218ENST00000555213 PLIN4Q96Q06 1357 aa12.88□□□□□ -0.35
SHMT2-218ENST00000555213 CCL15-CCL14A0A0B4J2E2 113 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 SLC27A2O14975 620 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 RANBP6O60518 1105 aaKnown RBP12.87□□□□□ -0.35
SHMT2-218ENST00000555213 GJA5P36382 358 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 SLC4A3P48751 1232 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 KIF23Q02241 960 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-218ENST00000555213 MAP2K1Q02750 393 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-218ENST00000555213 SEPT2Q15019 361 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 CCL15Q16663 113 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 OTUD7BQ6GQQ9 843 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 RALYLQ86SE5 291 aaKnown RBP12.87□□□□□ -0.35
SHMT2-218ENST00000555213 SNX21Q969T3 373 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 KRT23Q9C075 422 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 TMOD4Q9NZQ9 345 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-218ENST00000555213 AFG3L2Q9Y4W6 797 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 MYH8P13535 1937 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 ATAD5Q96QE3 1844 aa12.87□□□□□ -0.35
SHMT2-218ENST00000555213 USP17L10C9JJH3 530 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 FGRP09769 529 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 ZKSCAN1P17029 563 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-218ENST00000555213 MCCP23508 829 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 USP14P54578 494 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 TFAP4Q01664 338 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 SPP2Q13103 211 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 MTMR2Q13614 643 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 SHROOM1Q2M3G4 852 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-218ENST00000555213 ADCK5Q3MIX3 580 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 FASTKD5Q7L8L6 764 aaKnown RBP12.86□□□□□ -0.35
SHMT2-218ENST00000555213 CCDC84Q86UT8 332 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-218ENST00000555213 NEDD4P46934 1319 aa12.86□□□□□ -0.35
SHMT2-218ENST00000555213 A0A0G2JLL6 359 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-218ENST00000555213 C19orf81C9J6K1 198 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 ALDH1A1P00352 501 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 CYP21A2P08686 494 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 HSPA1AP0DMV8 641 aaKnown RBP12.85□□□□□ -0.35
SHMT2-218ENST00000555213 HSPA1BP0DMV9 641 aaKnown RBP12.85□□□□□ -0.35
SHMT2-218ENST00000555213 BACE1P56817 501 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 JAG1P78504 1218 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 ATP2B2Q01814 1243 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 RABEP1Q15276 862 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 FAM47AQ5JRC9 791 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 PRRT2Q7Z6L0 340 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-218ENST00000555213 IQCA1Q86XH1 822 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 PROCA1Q8NCQ7 364 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-218ENST00000555213 NEDD1Q8NHV4 660 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 NBPF3Q9H094 633 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 PCNTO95613 3336 aa12.85□□□□□ -0.35
SHMT2-218ENST00000555213 CA12O43570 354 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 TTLL1O95922 423 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 GUCY1A2P33402 732 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 HMGCS2P54868 508 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 PABPC4Q13310 644 aaKnown RBP eCLIP12.84□□□□□ -0.35
SHMT2-218ENST00000555213 KRT32Q14532 448 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 CCDC178Q5BJE1 867 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 USP17L2Q6R6M4 530 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 GADL1Q6ZQY3 521 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 NCOA7Q8NI08 942 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 CEP95Q96GE4 821 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 MS4A4AQ96JQ5 239 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 UBAC1Q9BSL1 405 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 TM6SF1Q9BZW5 370 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 KIAA1683Q9H0B3 1180 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 ZSWIM6Q9HCJ5 1215 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 GOPCQ9HD26 462 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 SYNPO2Q9UMS6 1093 aa12.84□□□□□ -0.35
SHMT2-218ENST00000555213 TESPA1A2RU30 521 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-218ENST00000555213 B4E1Z4 1266 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 KDM4AO75164 1064 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 EEF2P13639 858 aaKnown RBP12.83□□□□□ -0.36
SHMT2-218ENST00000555213 TM4SF4P48230 202 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 SART3Q15020 963 aaKnown RBP12.83□□□□□ -0.36
SHMT2-218ENST00000555213 STOX1Q6ZVD7 989 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 ANKRD23Q86SG2 305 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 IFNL1Q8IU54 200 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 BRI3BPQ8WY22 251 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 TTC14Q96N46 770 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 ZCCHC17Q9NP64 241 aaKnown RBP12.83□□□□□ -0.36
SHMT2-218ENST00000555213 MTMR4Q9NYA4 1195 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 NYAP2Q9P242 653 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 PNMA3Q9UL41 463 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 STX8Q9UNK0 236 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 TACC3Q9Y6A5 838 aa12.83□□□□□ -0.36
SHMT2-218ENST00000555213 IGKV6D-41A0A0C4DH26 115 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 E7EWF7 191 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms