RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 FAM20CQ8IXL6 584 aa7.35□□□□□ -1.23
LIMA1-205ENST00000550592 FAM178BQ8IXR5 827 aa7.35□□□□□ -1.23
LIMA1-205ENST00000550592 UTP4Q969X6 686 aaKnown RBP7.35□□□□□ -1.23
LIMA1-205ENST00000550592 SSBP4Q9BWG4 385 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-205ENST00000550592 ZNF214Q9UL59 606 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-205ENST00000550592 MAPK8IP1Q9UQF2 711 aa7.35□□□□□ -1.23
LIMA1-205ENST00000550592 DAGLAQ9Y4D2 1042 aa7.35□□□□□ -1.23
LIMA1-205ENST00000550592 RNF225M0QZC1 329 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-205ENST00000550592 DDAH1O94760 285 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 MAP4P27816 1152 aaKnown RBP7.34□□□□□ -1.23
LIMA1-205ENST00000550592 GBP1P32455 592 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 RASGRF1Q13972 1273 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 NCAPHQ15003 741 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 C6orf15Q6UXA7 325 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-205ENST00000550592 CD163Q86VB7 1156 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 TMEM192Q8IY95 271 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 BAHD1Q8TBE0 780 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-205ENST00000550592 PPP1R13LQ8WUF5 828 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 DCAF5Q96JK2 942 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.34□□□□□ -1.23
LIMA1-205ENST00000550592 CEP131Q9UPN4 1083 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 TBX22Q9Y458 520 aa7.34□□□□□ -1.23
LIMA1-205ENST00000550592 FAM95CA0A1B0GW59 222 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 PDPK1O15530 556 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 DYNC1LI2O43237 492 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-205ENST00000550592 CHRNA4P43681 627 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 BBS9Q3SYG4 887 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 VHLLQ6RSH7 139 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 DNAJB8Q8NHS0 232 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 KLHL6Q8WZ60 621 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 C1GALT1Q9NS00 363 aa7.33□□□□□ -1.24
LIMA1-205ENST00000550592 COL17A1Q9UMD9 1497 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-205ENST00000550592 FAM86C2PA6NEL3 165 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 B2RBV5 119 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 C1QTNF9BB2RNN3 333 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 PMS1P54277 932 aaKnown RBP7.32□□□□□ -1.24
LIMA1-205ENST00000550592 SLC7A5Q01650 507 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 CLEC10AQ8IUN9 316 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 XAGE3Q8WTP9 111 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 SLC6A18Q96N87 628 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 LGR6Q9HBX8 967 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 SUCOQ9UBS9 1254 aaKnown RBP7.32□□□□□ -1.24
LIMA1-205ENST00000550592 PCDHB10Q9UN67 800 aa7.32□□□□□ -1.24
LIMA1-205ENST00000550592 TMA7Q9Y2S6 64 aaKnown RBP7.32□□□□□ -1.24
LIMA1-205ENST00000550592 CCDC85CA6NKD9 419 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 DHX15O43143 795 aaKnown RBP7.31□□□□□ -1.24
LIMA1-205ENST00000550592 CLEC3AO75596 197 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 SLITRK5O94991 958 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 RXRBP28702 533 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 GNPTABQ3T906 1256 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 MRM1Q6IN84 353 aaKnown RBP7.31□□□□□ -1.24
LIMA1-205ENST00000550592 LETMD1Q6P1Q0 360 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 PAOXQ6QHF9 649 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 RIN3Q8TB24 985 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 ZNF669Q96BR6 464 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-205ENST00000550592 FAM83CQ9BQN1 747 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 PRDM10Q9NQV6 1147 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 STK17AQ9UEE5 414 aa7.31□□□□□ -1.24
LIMA1-205ENST00000550592 NFKBIBQ15653 356 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 KIAA1211LQ6NV74 962 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 BEND4Q6ZU67 534 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 JAZF1Q86VZ6 243 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 FAM177A1Q8N128 213 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-205ENST00000550592 ST13P5Q8NFI4 369 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-205ENST00000550592 VWCEQ96DN2 955 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 DNAJC7Q99615 494 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 MIPEPQ99797 713 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 KCNF1Q9H3M0 494 aa7.3□□□□□ -1.24
LIMA1-205ENST00000550592 CANXP27824 592 aaKnown RBP7.29□□□□□ -1.24
LIMA1-205ENST00000550592 CDK5R2Q13319 367 aa7.29□□□□□ -1.24
LIMA1-205ENST00000550592 NBPF12Q5TAG4 269 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-205ENST00000550592 EEPD1Q7L9B9 569 aa7.29□□□□□ -1.24
LIMA1-205ENST00000550592 PPFIBP1Q86W92 1011 aa7.29□□□□□ -1.24
LIMA1-205ENST00000550592 SMARCC1Q92922 1105 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-205ENST00000550592 C9IYK1 514 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 ETV3P41162 512 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 GATA4P43694 442 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 KCNMA1Q12791 1236 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 IFRD2Q12894 506 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-205ENST00000550592 ANKRD39Q53RE8 183 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 SDE2Q6IQ49 451 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 CDH24Q86UP0 819 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 NLGN1Q8N2Q7 840 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 LILRB2Q8N423 598 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 GIMAP7Q8NHV1 300 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 RNPC3Q96LT9 517 aaKnown RBP7.28□□□□□ -1.24
LIMA1-205ENST00000550592 FBXL18Q96ME1 805 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 KREMEN1Q96MU8 473 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 DUSP23Q9BVJ7 150 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 EPN3Q9H201 632 aa7.28□□□□□ -1.24
LIMA1-205ENST00000550592 EOMESO95936 686 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 GSK3AP49840 483 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 ZNF143P52747 638 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-205ENST00000550592 AXDND1Q5T1B0 1012 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-205ENST00000550592 FAM214BQ7L5A3 538 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 RNF141Q8WVD5 230 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 GATA6Q92908 595 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 SUSD2Q9UGT4 822 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 RAXQ9Y2V3 346 aa7.27□□□□□ -1.25
LIMA1-205ENST00000550592 MRPL42Q9Y6G3 142 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms