RNA–Protein interactions for RNA: ENST00000533730.5

CASP4-212, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 1,214 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-212ENST00000533730 TLR1Q15399 786 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 CWF19L2Q2TBE0 894 aaKnown RBP9.59□□□□□ -0.87
CASP4-212ENST00000533730 BEND3Q5T5X7 828 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 PRICKLE2Q7Z3G6 844 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 SLC9A9Q8IVB4 645 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 ALKBH8Q96BT7 664 aaKnown RBP9.59□□□□□ -0.87
CASP4-212ENST00000533730 FAM89AQ96GI7 184 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 CRAMP1Q96RY5 1269 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 ZSCAN10Q96SZ4 725 aaPredicted RBP9.59□□□□□ -0.87
CASP4-212ENST00000533730 DNAJC2Q99543 621 aaKnown RBP9.59□□□□□ -0.87
CASP4-212ENST00000533730 C2orf49Q9BVC5 232 aaPredicted RBP9.59□□□□□ -0.87
CASP4-212ENST00000533730 SRCIN1Q9C0H9 1055 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 NIF3L1Q9GZT8 377 aa9.59□□□□□ -0.87
CASP4-212ENST00000533730 COL11A2P13942 1736 aaPredicted RBP9.59□□□□□ -0.87
CASP4-212ENST00000533730 ARFGEF1Q9Y6D6 1849 aa9.59□□□□□ -0.88
CASP4-212ENST00000533730 ZBTB39O15060 712 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 PDE8AO60658 829 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 HCLS1P14317 486 aaPredicted RBP9.58□□□□□ -0.88
CASP4-212ENST00000533730 SF3B3Q15393 1217 aaKnown RBP9.58□□□□□ -0.88
CASP4-212ENST00000533730 FAM26DQ5JW98 314 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 PRPF40BQ6NWY9 871 aaKnown RBP9.58□□□□□ -0.88
CASP4-212ENST00000533730 SLC4A10Q6U841 1118 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 ATCAYQ86WG3 371 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 SCHIP1Q9P0W5 487 aaPredicted RBP9.58□□□□□ -0.88
CASP4-212ENST00000533730 PRKAG2Q9UGJ0 569 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 LRFN2Q9ULH4 789 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 TNRC6CQ9HCJ0 1690 aaKnown RBP9.58□□□□□ -0.88
CASP4-212ENST00000533730 LAMB2P55268 1798 aa9.58□□□□□ -0.88
CASP4-212ENST00000533730 SRCAPQ6ZRS2 3230 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 PNMA6FA0A0J9YX94 578 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 H7C1W4 665 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 CDK2AP1O14519 115 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 CCT4P50991 539 aaKnown RBP9.57□□□□□ -0.88
CASP4-212ENST00000533730 ENOX2Q16206 610 aaKnown RBP9.57□□□□□ -0.88
CASP4-212ENST00000533730 CCDC152Q4G0S7 254 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 DDX46Q7L014 1031 aaKnown RBP9.57□□□□□ -0.88
CASP4-212ENST00000533730 SYNE4Q8N205 404 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 DHX38Q92620 1227 aaKnown RBP9.57□□□□□ -0.88
CASP4-212ENST00000533730 TMX4Q9H1E5 349 aaPredicted RBP9.57□□□□□ -0.88
CASP4-212ENST00000533730 ACBD3Q9H3P7 528 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 NOB1Q9ULX3 412 aaKnown RBP9.57□□□□□ -0.88
CASP4-212ENST00000533730 USP3Q9Y6I4 520 aa9.57□□□□□ -0.88
CASP4-212ENST00000533730 GRM8O00222 908 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 BBOX1O75936 387 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 PTSQ03393 145 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 POU4F2Q12837 409 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 WDR44Q5JSH3 913 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 ARHGAP27Q6ZUM4 889 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 UBE3BQ7Z3V4 1068 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 STAG2Q8N3U4 1231 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 SLC43A3Q8NBI5 491 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 PLA2G12BQ9BX93 195 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 C9orf78Q9NZ63 289 aaPredicted RBP9.56□□□□□ -0.88
CASP4-212ENST00000533730 POLIQ9UNA4 740 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 HDAC5Q9UQL6 1122 aa9.56□□□□□ -0.88
CASP4-212ENST00000533730 DDX60Q8IY21 1712 aaKnown RBP9.56□□□□□ -0.88
CASP4-212ENST00000533730 SLC35F4A4IF30 521 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 TNNI2P48788 182 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 CTSWP56202 376 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 GRAPQ13588 217 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 CCDC93Q567U6 631 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 ZKSCAN2Q63HK3 967 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 ATF7IPQ6VMQ6 1270 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 RTKN2Q8IZC4 609 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 GRAPLQ8TC17 118 aaPredicted RBP9.55□□□□□ -0.88
CASP4-212ENST00000533730 RHBDD1Q8TEB9 315 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 FRAT1Q92837 279 aaPredicted RBP9.55□□□□□ -0.88
CASP4-212ENST00000533730 LNPKQ9C0E8 428 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 UTYO14607 1347 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 LTBP3Q9NS15 1303 aa9.55□□□□□ -0.88
CASP4-212ENST00000533730 RTL9Q8NET4 1388 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 BCAR3O75815 825 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 RHOQP17081 205 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 CASP7P55210 303 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 C4orf17Q53FE4 359 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 INTS3Q68E01 1043 aaKnown RBP9.54□□□□□ -0.88
CASP4-212ENST00000533730 ALG1LQ6GMV1 187 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 TMEM214Q6NUQ4 689 aaKnown RBP9.54□□□□□ -0.88
CASP4-212ENST00000533730 GJD3Q8N144 294 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 C7orf43Q8WVR3 580 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 YTHDC1Q96MU7 727 aaKnown RBP9.54□□□□□ -0.88
CASP4-212ENST00000533730 CDC5LQ99459 802 aaKnown RBP9.54□□□□□ -0.88
CASP4-212ENST00000533730 RCAN3Q9UKA8 241 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 SLX4Q8IY92 1834 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 ABCC4O15439 1325 aa9.54□□□□□ -0.88
CASP4-212ENST00000533730 CHD4Q14839 1912 aa9.53□□□□□ -0.88
CASP4-212ENST00000533730 TRIM27P14373 513 aa9.53□□□□□ -0.88
CASP4-212ENST00000533730 PSMA6P60900 246 aaKnown RBP9.53□□□□□ -0.88
CASP4-212ENST00000533730 TTLL11Q8NHH1 800 aa9.53□□□□□ -0.88
CASP4-212ENST00000533730 JARID2Q92833 1246 aaPredicted RBP9.53□□□□□ -0.88
CASP4-212ENST00000533730 MYO19Q96H55 970 aa9.53□□□□□ -0.88
CASP4-212ENST00000533730 CFHR5Q9BXR6 569 aa9.53□□□□□ -0.88
CASP4-212ENST00000533730 ATP6V0A2Q9Y487 856 aa9.53□□□□□ -0.88
CASP4-212ENST00000533730 CSF1RP07333 972 aa9.52□□□□□ -0.89
CASP4-212ENST00000533730 ATP2B1P20020 1258 aa9.52□□□□□ -0.89
CASP4-212ENST00000533730 LMNB1P20700 586 aa9.52□□□□□ -0.89
CASP4-212ENST00000533730 BRD2P25440 801 aaKnown RBP9.52□□□□□ -0.89
CASP4-212ENST00000533730 GNA15P30679 374 aa9.52□□□□□ -0.89
CASP4-212ENST00000533730 GTF2F1P35269 517 aaKnown RBP eCLIP9.52□□□□□ -0.89
CASP4-212ENST00000533730 RPS8P62241 208 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms