RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 C12orf42Q96LP6 360 aa18.6■□□□□ 0.57
CPSF1-211ENST00000533492 KIAA1683Q9H0B3 1180 aa18.6■□□□□ 0.57
CPSF1-211ENST00000533492 SWAP70Q9UH65 585 aa18.6■□□□□ 0.57
CPSF1-211ENST00000533492 SLC4A4Q9Y6R1 1079 aa18.6■□□□□ 0.57
CPSF1-211ENST00000533492 CHGBP05060 677 aa18.59■□□□□ 0.57
CPSF1-211ENST00000533492 INHAP05111 366 aa18.59■□□□□ 0.57
CPSF1-211ENST00000533492 SEPT2Q15019 361 aa18.59■□□□□ 0.57
CPSF1-211ENST00000533492 YTHDC1Q96MU7 727 aaKnown RBP18.59■□□□□ 0.57
CPSF1-211ENST00000533492 PAGR1Q9BTK6 254 aa18.59■□□□□ 0.57
CPSF1-211ENST00000533492 PCDHB15Q9Y5E8 787 aa18.59■□□□□ 0.57
CPSF1-211ENST00000533492 GUCY1A2P33402 732 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 GJA8P48165 433 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 EVX2Q03828 476 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 DYNLL2Q96FJ2 89 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 UNC93B1Q9H1C4 597 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 TXNRD2Q9NNW7 524 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 RBPJLQ9UBG7 517 aa18.58■□□□□ 0.56
CPSF1-211ENST00000533492 MYH7P12883 1935 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 USP17L12C9JPN9 530 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 USP17L21D6R901 530 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 PEX10O60683 326 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 ERVK-9P63128 1117 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 ERVK-24P63145 666 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 TSHZ3Q63HK5 1081 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 CATSPERGQ6ZRH7 1159 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 TMEM179Q6ZVK1 233 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 KBTBD3Q8NAB2 608 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 SLC44A5Q8NCS7 719 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 PUS7LQ9H0K6 701 aaKnown RBP18.57■□□□□ 0.56
CPSF1-211ENST00000533492 CWC22Q9HCG8 908 aaKnown RBP18.57■□□□□ 0.56
CPSF1-211ENST00000533492 ZBTB47Q9UFB7 747 aaPredicted RBP18.57■□□□□ 0.56
CPSF1-211ENST00000533492 GJD2Q9UKL4 321 aa18.57■□□□□ 0.56
CPSF1-211ENST00000533492 DDX60LQ5H9U9 1706 aaKnown RBP18.57■□□□□ 0.56
CPSF1-211ENST00000533492 BRCA2P51587 3418 aa18.56■□□□□ 0.56
CPSF1-211ENST00000533492 VCAM1P19320 739 aa18.56■□□□□ 0.56
CPSF1-211ENST00000533492 MAPK4P31152 587 aa18.56■□□□□ 0.56
CPSF1-211ENST00000533492 Q3C1V9 767 aa18.56■□□□□ 0.56
CPSF1-211ENST00000533492 C12orf60Q5U649 245 aa18.56■□□□□ 0.56
CPSF1-211ENST00000533492 U2AF1L4Q8WU68 220 aaKnown RBP18.56■□□□□ 0.56
CPSF1-211ENST00000533492 NUDT12Q9BQG2 462 aa18.56■□□□□ 0.56
CPSF1-211ENST00000533492 MKI67P46013 3256 aaKnown RBP18.55■□□□□ 0.56
CPSF1-211ENST00000533492 BAZ2AQ9UIF9 1905 aaKnown RBP18.55■□□□□ 0.56
CPSF1-211ENST00000533492 CYP2D7A0A087X1C5 515 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 ERC2O15083 957 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 SGPL1O95470 568 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 CYP2B6P20813 491 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 CDK8P49336 464 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 LRRFIP1Q32MZ4 808 aaKnown RBP18.55■□□□□ 0.56
CPSF1-211ENST00000533492 SHISA4Q96DD7 197 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 CCDC17Q96LX7 622 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 RPAP3Q9H6T3 665 aaPredicted RBP18.55■□□□□ 0.56
CPSF1-211ENST00000533492 RABGAP1Q9Y3P9 1069 aa18.55■□□□□ 0.56
CPSF1-211ENST00000533492 RNF113AO15541 343 aaKnown RBP18.54■□□□□ 0.56
CPSF1-211ENST00000533492 TFRCP02786 760 aaKnown RBP18.54■□□□□ 0.56
CPSF1-211ENST00000533492 HMGCRP04035 888 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 ZFYP08048 801 aaPredicted RBP18.54■□□□□ 0.56
CPSF1-211ENST00000533492 AKR1B1P15121 316 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 CCNA1P78396 465 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 SOCS4Q8WXH5 440 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 DEFB118Q96PH6 123 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 STRBPQ96SI9 672 aaKnown RBP18.54■□□□□ 0.56
CPSF1-211ENST00000533492 CRBNQ96SW2 442 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 ARHGEF10LQ9HCE6 1279 aa18.54■□□□□ 0.56
CPSF1-211ENST00000533492 TTC41PQ6P2S7 1318 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 A0A1W2PRG0 241 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 CAPN2P17655 700 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 CTR9Q6PD62 1173 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 PLEKHH3Q7Z736 793 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 APPBP2Q92624 585 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 GCC1Q96CN9 775 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 PORCNQ9H237 461 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 SH2D4AQ9H788 454 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 MYH8P13535 1937 aa18.53■□□□□ 0.56
CPSF1-211ENST00000533492 GLRX3O76003 335 aaKnown RBP18.52■□□□□ 0.56
CPSF1-211ENST00000533492 ICA1Q05084 483 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 WDR78Q5VTH9 848 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 C16orf86Q6ZW13 317 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 GPR142Q7Z601 462 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 DPF3Q92784 378 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 OSBP2Q969R2 916 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 TANGO6Q9C0B7 1094 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 HOXC10Q9NYD6 342 aa18.52■□□□□ 0.56
CPSF1-211ENST00000533492 ARPP21Q9UBL0 812 aaPredicted RBP18.52■□□□□ 0.56
CPSF1-211ENST00000533492 SMIM22K7EJ46 135 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 FARP2O94887 1054 aaPredicted RBP18.51■□□□□ 0.55
CPSF1-211ENST00000533492 XRCC5P13010 732 aaKnown RBP18.51■□□□□ 0.55
CPSF1-211ENST00000533492 RGS2P41220 211 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 COG2Q14746 738 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 ANKRD45Q5TZF3 282 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 GIMAP6Q6P9H5 292 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 POTEEQ6S8J3 1075 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 TRMT44Q8IYL2 757 aaKnown RBP18.51■□□□□ 0.55
CPSF1-211ENST00000533492 HTATIP2Q9BUP3 242 aa18.51■□□□□ 0.55
CPSF1-211ENST00000533492 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.51■□□□□ 0.551e-5■■■□□ 18
CPSF1-211ENST00000533492 HMX1Q9NP08 348 aaPredicted RBP18.51■□□□□ 0.55
CPSF1-211ENST00000533492 PAK6Q9NQU5 681 aaPredicted RBP18.51■□□□□ 0.55
CPSF1-211ENST00000533492 RPTORQ8N122 1335 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 SPDYE16A6NNV3 312 aaPredicted RBP18.5■□□□□ 0.55
CPSF1-211ENST00000533492 GSG1L2A8MUP6 293 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 MINDY4BA8MYZ0 360 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms