RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 ZMYM1Q5SVZ6 1142 aa9.25□□□□□ -0.93
PCF11-202ENST00000528336 SRRTQ9BXP5 876 aaKnown RBP9.25□□□□□ -0.93
PCF11-202ENST00000528336 U3KQE9 123 aa9.25□□□□□ -0.93
PCF11-202ENST00000528336 FAM86C2PA6NEL3 165 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 CBX7O95931 251 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 GRIK1P39086 918 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 EIF6P56537 245 aaKnown RBP9.24□□□□□ -0.93
PCF11-202ENST00000528336 ARID5AQ03989 594 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 CPSF6Q16630 551 aaKnown RBP eCLIP9.24□□□□□ -0.93
PCF11-202ENST00000528336 CDCP2Q5VXM1 449 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 DNAJB8Q8NHS0 232 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 PPP1R13LQ8WUF5 828 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 CNNM2Q9H8M5 875 aa9.24□□□□□ -0.93
PCF11-202ENST00000528336 COBLO75128 1261 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 MED26O95402 600 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 NME1P15531 152 aaKnown RBP9.23□□□□□ -0.93
PCF11-202ENST00000528336 ITIH2P19823 946 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 ETV3P41162 512 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 CHMP4BP1P59074 171 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 SFRP5Q5T4F7 317 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 RUFY4Q6ZNE9 571 aa9.23□□□□□ -0.93
PCF11-202ENST00000528336 ZC3H7BQ9UGR2 993 aaKnown RBP9.23□□□□□ -0.93
PCF11-202ENST00000528336 MEIS3P2A8K0S8 358 aa9.22□□□□□ -0.93
PCF11-202ENST00000528336 RGS13O14921 159 aa9.22□□□□□ -0.93
PCF11-202ENST00000528336 CYP7A1P22680 504 aa9.22□□□□□ -0.93
PCF11-202ENST00000528336 ZNF746Q6NUN9 644 aaPredicted RBP9.22□□□□□ -0.93
PCF11-202ENST00000528336 ANAPC16Q96DE5 110 aa9.22□□□□□ -0.93
PCF11-202ENST00000528336 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.22□□□□□ -0.93
PCF11-202ENST00000528336 GNAT3A8MTJ3 354 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 PRR33A8MZF0 331 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 SSBP05455 408 aaKnown RBP eCLIP9.21□□□□□ -0.94
PCF11-202ENST00000528336 OXCT1P55809 520 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 INTS5Q6P9B9 1019 aaKnown RBP9.21□□□□□ -0.94
PCF11-202ENST00000528336 LSRQ86X29 649 aaPredicted RBP9.21□□□□□ -0.94
PCF11-202ENST00000528336 PLD6Q8N2A8 252 aaKnown RBP9.21□□□□□ -0.94
PCF11-202ENST00000528336 SLC43A3Q8NBI5 491 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 SLC9A7Q96T83 725 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 MAPK8IP1Q9UQF2 711 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 MRVI1Q9Y6F6 885 aa9.21□□□□□ -0.94
PCF11-202ENST00000528336 IGF2BP3O00425 579 aaKnown RBP eCLIP9.2□□□□□ -0.94
PCF11-202ENST00000528336 UBOX5O94941 541 aa9.2□□□□□ -0.94
PCF11-202ENST00000528336 RBBP8NLQ8NC74 664 aaPredicted RBP9.2□□□□□ -0.94
PCF11-202ENST00000528336 SHDQ96IW2 340 aa9.2□□□□□ -0.94
PCF11-202ENST00000528336 FAM155AB1AL88 458 aaPredicted RBP9.19□□□□□ -0.94
PCF11-202ENST00000528336 ACRP10323 421 aa9.19□□□□□ -0.94
PCF11-202ENST00000528336 GIPRP48546 466 aa9.19□□□□□ -0.94
PCF11-202ENST00000528336 KREMEN1Q96MU8 473 aa9.19□□□□□ -0.94
PCF11-202ENST00000528336 STRIP2Q9ULQ0 834 aa9.19□□□□□ -0.94
PCF11-202ENST00000528336 SCO2A0A1W2PP80 73 aa9.18□□□□□ -0.94
PCF11-202ENST00000528336 TNFRSF10CO14798 259 aa9.18□□□□□ -0.94
PCF11-202ENST00000528336 PPP2R5EQ16537 467 aa9.18□□□□□ -0.94
PCF11-202ENST00000528336 NETO1Q8TDF5 533 aa9.18□□□□□ -0.94
PCF11-202ENST00000528336 TM9SF2Q99805 663 aa9.18□□□□□ -0.94
PCF11-202ENST00000528336 PLAGL2Q9UPG8 496 aa9.18□□□□□ -0.94
PCF11-202ENST00000528336 LRRN2O75325 713 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 CEACAM5P06731 702 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 GUCY2CP25092 1073 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 CD97P48960 835 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 MSMPQ1L6U9 139 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 CDKAL1Q5VV42 579 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 INTS3Q68E01 1043 aaKnown RBP9.17□□□□□ -0.94
PCF11-202ENST00000528336 MCF2L2Q86YR7 1114 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 TMEM192Q8IY95 271 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 MFSD4AQ8N468 514 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 FAM169BQ8N8A8 192 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 OR6P1Q8NGX9 317 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 ZNF512BQ96KM6 892 aaPredicted RBP9.17□□□□□ -0.94
PCF11-202ENST00000528336 C8orf37Q96NL8 207 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.17□□□□□ -0.94
PCF11-202ENST00000528336 PCMTD2Q9NV79 361 aa9.17□□□□□ -0.94
PCF11-202ENST00000528336 CLEC3AO75596 197 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 FGRP09769 529 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 ZYXQ15942 572 aaKnown RBP9.16□□□□□ -0.94
PCF11-202ENST00000528336 NKPD1Q17RQ9 610 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 UNC5AQ6ZN44 842 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 RNF141Q8WVD5 230 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 SLC6A18Q96N87 628 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 GMLQ99445 158 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 MKNK2Q9HBH9 465 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 CAPN6Q9Y6Q1 641 aa9.16□□□□□ -0.94
PCF11-202ENST00000528336 ETFBP38117 255 aa9.15□□□□□ -0.94
PCF11-202ENST00000528336 IFI16Q16666 785 aaKnown RBP9.15□□□□□ -0.94
PCF11-202ENST00000528336 TTC6Q86TZ1 520 aa9.15□□□□□ -0.94
PCF11-202ENST00000528336 TAB3Q8N5C8 712 aaPredicted RBP9.15□□□□□ -0.94
PCF11-202ENST00000528336 COX4I2Q96KJ9 171 aa9.15□□□□□ -0.94
PCF11-202ENST00000528336 Q96M66 194 aa9.15□□□□□ -0.94
PCF11-202ENST00000528336 BSDC1Q9NW68 430 aaPredicted RBP9.15□□□□□ -0.94
PCF11-202ENST00000528336 COL17A1Q9UMD9 1497 aaPredicted RBP9.15□□□□□ -0.95
PCF11-202ENST00000528336 TMEM265A0A087WTH1 108 aa9.14□□□□□ -0.95
PCF11-202ENST00000528336 HYAL3O43820 417 aaPredicted RBP9.14□□□□□ -0.95
PCF11-202ENST00000528336 ZNF865P0CJ78 1059 aaPredicted RBP9.14□□□□□ -0.95
PCF11-202ENST00000528336 CCNFP41002 786 aa9.14□□□□□ -0.95
PCF11-202ENST00000528336 KIR3DL1P43629 444 aa9.14□□□□□ -0.95
PCF11-202ENST00000528336 SPACA3Q8IXA5 215 aa9.14□□□□□ -0.95
PCF11-202ENST00000528336 TANGO6Q9C0B7 1094 aa9.14□□□□□ -0.95
PCF11-202ENST00000528336 SMAD7O15105 426 aaKnown RBP9.13□□□□□ -0.95
PCF11-202ENST00000528336 RNF4P78317 190 aa9.13□□□□□ -0.95
PCF11-202ENST00000528336 TNK2Q07912 1038 aa9.13□□□□□ -0.95
PCF11-202ENST00000528336 BNIP3Q12983 259 aa9.13□□□□□ -0.95
PCF11-202ENST00000528336 LRP8Q14114 963 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms