RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 UTP6Q9NYH9 597 aaKnown RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 GGA2Q9UJY4 613 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 CORO1CQ9ULV4 474 aaPredicted RBP6.6□□□□□ -1.35
CD44-225ENST00000527326 TNNQ9UQP3 1299 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 ADGBQ8N7X0 1667 aa6.6□□□□□ -1.35
CD44-225ENST00000527326 CD109Q6YHK3 1445 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 NPHP3Q7Z494 1330 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 RBM47A0AV96 593 aaKnown RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 ZSCAN12O43309 604 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 TPD52L2O43399 206 aaKnown RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 RASSF9O75901 435 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 SASH1O94885 1247 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 F13A1P00488 732 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 PYGLP06737 847 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 PEX19P40855 299 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 CCT5P48643 541 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 ZNF165P49910 485 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 LRRC23Q53EV4 343 aaPredicted RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 RRP12Q5JTH9 1297 aaKnown RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 SPTY2D1Q68D10 685 aaPredicted RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 CAPRIN2Q6IMN6 1127 aaKnown RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 LYSMD3Q7Z3D4 306 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 MSANTD4Q8NCY6 345 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 TRIM58Q8NG06 486 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 NUP133Q8WUM0 1156 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 SMARCC1Q92922 1105 aaPredicted RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 BICD1Q96G01 975 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 NAT10Q9H0A0 1025 aaKnown RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 TNMDQ9H2S6 317 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 VCPKMTQ9H867 229 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 ACTR5Q9H9F9 607 aaPredicted RBP6.59□□□□□ -1.35
CD44-225ENST00000527326 SYNPO2Q9UMS6 1093 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 L1RE1Q9UN81 338 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 PARP3Q9Y6F1 533 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 NDUFB9Q9Y6M9 179 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 ARAP3Q8WWN8 1544 aa6.59□□□□□ -1.35
CD44-225ENST00000527326 PLA2R1Q13018 1463 aa6.59□□□□□ -1.36
CD44-225ENST00000527326 CDC42BPAQ5VT25 1732 aa6.59□□□□□ -1.36
CD44-225ENST00000527326 LRRIQ1Q96JM4 1722 aa6.59□□□□□ -1.36
CD44-225ENST00000527326 SSH2Q76I76 1423 aa6.59□□□□□ -1.36
CD44-225ENST00000527326 PRAG1Q86YV5 1406 aa6.59□□□□□ -1.36
CD44-225ENST00000527326 ABCC11Q96J66 1382 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 SYNRGQ9UMZ2 1314 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.58□□□□□ -1.36
CD44-225ENST00000527326 MEFVO15553 781 aaPredicted RBP6.58□□□□□ -1.36
CD44-225ENST00000527326 MYL1P05976 194 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 SYT1P21579 422 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 RFX1P22670 979 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 SFPQP23246 707 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-225ENST00000527326 MCM3P25205 808 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 RANBP1P43487 201 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 NEK4P51957 841 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 PPFIA1Q13136 1202 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 CCDC57Q2TAC2 916 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 CCDC40Q4G0X9 1142 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 RNFT1Q5M7Z0 435 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 CFAP70Q5T0N1 1121 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 MTHFD1LQ6UB35 978 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 PRICKLE2Q7Z3G6 844 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 FAM114A1Q8IWE2 563 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 TBC1D5Q92609 795 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 RUNDC1Q96C34 613 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 CCDC114Q96M63 670 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 MMADHCQ9H3L0 296 aaPredicted RBP6.58□□□□□ -1.36
CD44-225ENST00000527326 CLSTN2Q9H4D0 955 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 CWC25Q9NXE8 425 aaPredicted RBP6.58□□□□□ -1.36
CD44-225ENST00000527326 DDX20Q9UHI6 824 aaKnown RBP6.58□□□□□ -1.36
CD44-225ENST00000527326 MRFAP1Q9Y605 127 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 ADAMTSL3P82987 1691 aa6.58□□□□□ -1.36
CD44-225ENST00000527326 ATP5J2-PTCD1G3V325 749 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 MEN1O00255 615 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 FIBPO43427 364 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 STX6O43752 255 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 TRIM27P14373 513 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 GSPT1P15170 499 aaKnown RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 RHOQP17081 205 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 PAX3P23760 479 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 YY1P25490 414 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 PAPOLAP51003 745 aaKnown RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 ACTN3Q08043 901 aaPredicted RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 NR1H3Q13133 447 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 DYNC1I2Q13409 638 aaKnown RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 SNX1Q13596 522 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 KCNB1Q14721 858 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 CCDC181Q5TID7 509 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 MIS18BP1Q6P0N0 1132 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 ATL2Q8NHH9 583 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 FAM76AQ8TAV0 307 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 ZCRB1Q8TBF4 217 aaKnown RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 CCHCR1Q8TD31 782 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 LEO1Q8WVC0 666 aaPredicted RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 RBM17Q96I25 401 aaKnown RBP6.57□□□□□ -1.36
CD44-225ENST00000527326 PRAM1Q96QH2 718 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 ARPC5LQ9BPX5 153 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 TSGA10Q9BZW7 698 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 FANCAO15360 1455 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 MAGI2Q86UL8 1455 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 NOS1P29475 1434 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 ABCA9Q8IUA7 1624 aa6.57□□□□□ -1.36
CD44-225ENST00000527326 ABCA8O94911 1581 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms