RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MAEAQ7L5Y9 396 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 TDRD7Q8NHU6 1098 aaKnown RBP13.13□□□□□ -0.31
SYNPO-204ENST00000519664 NLRC4Q9NPP4 1024 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 GTF2IP78347 998 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 USPL1Q5W0Q7 1092 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 SNX29Q8TEQ0 813 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 CROCC2H7BZ55 1655 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 ZEB2O60315 1214 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 HERC4Q5GLZ8 1057 aaPredicted RBP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 WDR66Q8TBY9 1149 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 CARD10Q9BWT7 1032 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 CSRNP2Q9H175 543 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 GGA1Q9UJY5 639 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 WDR17Q8IZU2 1322 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 TMEM110-MUSTN1A8MSY1 372 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 MRPL12P52815 198 aaKnown RBP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 RASGRF1Q13972 1273 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 NONOQ15233 471 aaKnown RBP eCLIP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 MFSD14BQ5SR56 506 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 ETF1P62495 437 aaKnown RBP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 USH1GQ495M9 461 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 HEG1Q9ULI3 1381 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 ECM2O94769 699 aaPredicted RBP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 TUBB4AP04350 444 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 SCARF1Q14162 830 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 FNBP4Q8N3X1 1017 aaPredicted RBP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 SYMPKQ92797 1274 aaKnown RBP13.12□□□□□ -0.31
SYNPO-204ENST00000519664 FERMT2Q96AC1 680 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 SCLT1Q96NL6 688 aa13.12□□□□□ -0.31
SYNPO-204ENST00000519664 SMCO2A6NFE2 343 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 PTPROQ16827 1216 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 BICD1Q96G01 975 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 GPR108Q9NPR9 543 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 SMIM23A6NLE4 172 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 CIAO1O76071 339 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 TECP42680 631 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 ATRIPQ8WXE1 791 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 NAPGQ99747 312 aaPredicted RBP13.11□□□□□ -0.31
SYNPO-204ENST00000519664 IVLP07476 585 aa13.11□□□□□ -0.31
SYNPO-204ENST00000519664 FRMPD2Q68DX3 1309 aaPredicted RBP13.11□□□□□ -0.31
SYNPO-204ENST00000519664 NBPF26B4DH59 902 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 HSF2BPO75031 334 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 FAM13AO94988 1023 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 GJC1P36383 396 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 KIAA0753Q2KHM9 967 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 NBPF14Q5TI25 921 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 NBPF10Q6P3W6 841 aaKnown RBP13.1□□□□□ -0.31
SYNPO-204ENST00000519664 CABP7Q86V35 215 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 NBPF15Q8N660 670 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 EYA3Q99504 573 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 QRICH2Q9H0J4 1663 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 TLDC2A0PJX2 215 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 KLRF2D3W0D1 207 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 SLC1A4P43007 532 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 SCNN1DP51172 638 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 RBM6P78332 1123 aaKnown RBP13.1□□□□□ -0.31
SYNPO-204ENST00000519664 LRRC47Q8N1G4 583 aaKnown RBP13.1□□□□□ -0.31
SYNPO-204ENST00000519664 CASP1P29466 404 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 CYP26C1Q6V0L0 522 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 REXO1Q8N1G1 1221 aaKnown RBP13.1□□□□□ -0.31
SYNPO-204ENST00000519664 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.1□□□□□ -0.31
SYNPO-204ENST00000519664 PCDHB6Q9Y5E3 794 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 A0A1W2PQ27 194 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 A0A1W2PQ64 194 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 A0A1W2PQD8 194 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 NAA30Q147X3 362 aaPredicted RBP13.1□□□□□ -0.31
SYNPO-204ENST00000519664 CCDC174Q6PII3 467 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 STXBP4Q6ZWJ1 553 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 HS2ST1Q7LGA3 356 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 C10orf67Q8IYJ2 551 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 BLIDQ8IZY5 108 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 ANKRD13CQ8N6S4 541 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 POLR3EQ9NVU0 708 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 PPP2R2CQ9Y2T4 447 aa13.1□□□□□ -0.31
SYNPO-204ENST00000519664 MED14O60244 1454 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 CYP2E1P05181 493 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-204ENST00000519664 POTEJP0CG39 1038 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 SCG2P13521 617 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 KRT13P13646 458 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 TTLL12Q14166 644 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-204ENST00000519664 SUSD4Q5VX71 490 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 EPSTI1Q96J88 318 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 SAMSN1Q9NSI8 373 aaKnown RBP13.09□□□□□ -0.31
SYNPO-204ENST00000519664 ADGRB3O60242 1522 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 CETN2P41208 172 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 MAP2K1Q02750 393 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-204ENST00000519664 STOX1Q6ZVD7 989 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 CRB1P82279 1406 aa13.09□□□□□ -0.31
SYNPO-204ENST00000519664 CLGNO14967 610 aa13.08□□□□□ -0.31
SYNPO-204ENST00000519664 TYW1BQ6NUM6 668 aa13.08□□□□□ -0.31
SYNPO-204ENST00000519664 TMTC1Q8IUR5 882 aa13.08□□□□□ -0.31
SYNPO-204ENST00000519664 JAKMIP2Q96AA8 810 aa13.08□□□□□ -0.31
SYNPO-204ENST00000519664 EHMT1Q9H9B1 1298 aa13.08□□□□□ -0.31
SYNPO-204ENST00000519664 SOS2Q07890 1332 aaPredicted RBP13.08□□□□□ -0.31
SYNPO-204ENST00000519664 MED23Q9ULK4 1368 aa13.08□□□□□ -0.31
SYNPO-204ENST00000519664 ARHGEF40Q8TER5 1519 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 CEP152O94986 1710 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 IL6STP40189 918 aaPredicted RBP13.08□□□□□ -0.32
SYNPO-204ENST00000519664 PPP2R5BQ15173 497 aa13.08□□□□□ -0.32
SYNPO-204ENST00000519664 SMIM5Q71RC9 77 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms