RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 USP17L21D6R901 530 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 ERC2O15083 957 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 ERVK-9P63128 1117 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 ERVK-24P63145 666 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 CCNA1P78396 465 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 CATSPERGQ6ZRH7 1159 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 KBTBD3Q8NAB2 608 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 SOCS4Q8WXH5 440 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 GCC1Q96CN9 775 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 DYNLL2Q96FJ2 89 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 CCDC17Q96LX7 622 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 NUDT12Q9BQG2 462 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 PUS7LQ9H0K6 701 aaKnown RBP16.42■□□□□ 0.22
TCOF1-215ENST00000515516 TXNRD2Q9NNW7 524 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 PCDHB15Q9Y5E8 787 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 ZSWIM8A7E2V4 1837 aa16.42■□□□□ 0.22
TCOF1-215ENST00000515516 SIPA1L1O43166 1804 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 GLRX3O76003 335 aaKnown RBP16.41■□□□□ 0.22
TCOF1-215ENST00000515516 TFRCP02786 760 aaKnown RBP16.41■□□□□ 0.22
TCOF1-215ENST00000515516 ZFYP08048 801 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-215ENST00000515516 VCAM1P19320 739 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 GUCY1A2P33402 732 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 C12orf60Q5U649 245 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 TSHZ3Q63HK5 1081 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 SLC44A5Q8NCS7 719 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 U2AF1L4Q8WU68 220 aaKnown RBP16.41■□□□□ 0.22
TCOF1-215ENST00000515516 RPAP3Q9H6T3 665 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-215ENST00000515516 SH2D4AQ9H788 454 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 ARHGEF10LQ9HCE6 1279 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 GJD2Q9UKL4 321 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 RABGAP1Q9Y3P9 1069 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 HTTP42858 3142 aa16.41■□□□□ 0.22
TCOF1-215ENST00000515516 MYO5AQ9Y4I1 1855 aaKnown RBP16.4■□□□□ 0.22
TCOF1-215ENST00000515516 RNF113AO15541 343 aaKnown RBP16.4■□□□□ 0.22
TCOF1-215ENST00000515516 SGPL1O95470 568 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 HMGCRP04035 888 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 CHGBP05060 677 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 CYP2B6P20813 491 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 CDK8P49336 464 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 EVX2Q03828 476 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 Q3C1V9 767 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 TRMT44Q8IYL2 757 aaKnown RBP16.4■□□□□ 0.22
TCOF1-215ENST00000515516 APPBP2Q92624 585 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 ARPP21Q9UBL0 812 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-215ENST00000515516 LOC285556D6RIA3 1793 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 TTC41PQ6P2S7 1318 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 FOCADQ5VW36 1801 aa16.4■□□□□ 0.22
TCOF1-215ENST00000515516 CYP2D7A0A087X1C5 515 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 PEX10O60683 326 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 WDR78Q5VTH9 848 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 CTR9Q6PD62 1173 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 PLEKHH3Q7Z736 793 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 DPF3Q92784 378 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 SHISA4Q96DD7 197 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 DEFB118Q96PH6 123 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 STRBPQ96SI9 672 aaKnown RBP16.39■□□□□ 0.21
TCOF1-215ENST00000515516 CRBNQ96SW2 442 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 HTATIP2Q9BUP3 242 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 TANGO6Q9C0B7 1094 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 HOXC10Q9NYD6 342 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 PTPRFP10586 1907 aa16.39■□□□□ 0.21
TCOF1-215ENST00000515516 ATAD5Q96QE3 1844 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 APPP05067 770 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 XRCC5P13010 732 aaKnown RBP16.38■□□□□ 0.21
TCOF1-215ENST00000515516 AKR1B1P15121 316 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 GNAT2P19087 354 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 RGS2P41220 211 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 ATP2B2Q01814 1243 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 ICA1Q05084 483 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 COG2Q14746 738 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 GIMAP6Q6P9H5 292 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 C16orf86Q6ZW13 317 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 GPR142Q7Z601 462 aa16.38■□□□□ 0.21
TCOF1-215ENST00000515516 HMX1Q9NP08 348 aaPredicted RBP16.38■□□□□ 0.21
TCOF1-215ENST00000515516 TNRC18O15417 2968 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-215ENST00000515516 A0A1W2PRG0 241 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 FARP2O94887 1054 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-215ENST00000515516 ANKRD45Q5TZF3 282 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 LBX2Q6XYB7 198 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 LPAR1Q92633 364 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 OSBP2Q969R2 916 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.37■□□□□ 0.21
TCOF1-215ENST00000515516 PORCNQ9H237 461 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 KANSL2Q9H9L4 492 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 MKNK2Q9HBH9 465 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 PAK6Q9NQU5 681 aaPredicted RBP16.37■□□□□ 0.21
TCOF1-215ENST00000515516 IVNS1ABPQ9Y6Y0 642 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 RPTORQ8N122 1335 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 CDK5RAP2Q96SN8 1893 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 MYH1P12882 1939 aa16.37■□□□□ 0.21
TCOF1-215ENST00000515516 RBBP6Q7Z6E9 1792 aaKnown RBP16.36■□□□□ 0.21
TCOF1-215ENST00000515516 KIAA0100Q14667 2235 aaKnown RBP16.36■□□□□ 0.21
TCOF1-215ENST00000515516 MINDY4BA8MYZ0 360 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 ZKSCAN1P17029 563 aaPredicted RBP16.36■□□□□ 0.21
TCOF1-215ENST00000515516 TDO2P48775 406 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 SBK1Q52WX2 424 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 FSD1Q9BTV5 496 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 NACAP1Q9BZK3 213 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 ZNF287Q9HBT7 754 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 TMX2Q9Y320 296 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms