RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 ZNF70Q9UC06 446 aaPredicted RBP10.66□□□□□ -0.7
CPNE4-213ENST00000515418 GADD45BO75293 160 aaPredicted RBP10.65□□□□□ -0.7
CPNE4-213ENST00000515418 FMNL1O95466 1100 aaPredicted RBP10.65□□□□□ -0.7
CPNE4-213ENST00000515418 HLA-DOAP06340 250 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 EIF6P56537 245 aaKnown RBP10.65□□□□□ -0.7
CPNE4-213ENST00000515418 TNIP1Q15025 636 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 PIAS4Q8N2W9 510 aaPredicted RBP10.65□□□□□ -0.7
CPNE4-213ENST00000515418 PNMA1Q8ND90 353 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 PIBF1Q8WXW3 757 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 SYT17Q9BSW7 474 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 ALG1Q9BT22 464 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 TCP11L1Q9NUJ3 509 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 KIF3AQ9Y496 699 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 V9GY48 417 aaPredicted RBP10.65□□□□□ -0.7
CPNE4-213ENST00000515418 MYH8P13535 1937 aa10.65□□□□□ -0.7
CPNE4-213ENST00000515418 CCDC196A0A1B0GTZ2 297 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 FIBPO43427 364 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 RESTQ13127 1097 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 CDAN1Q8IWY9 1227 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 STAG2Q8N3U4 1231 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 FBXO18Q8NFZ0 1043 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 ANKS1AQ92625 1134 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 VEZTQ9HBM0 779 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 PI4KBQ9UBF8 816 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 ATP6V1DQ9Y5K8 247 aa10.65□□□□□ -0.71
CPNE4-213ENST00000515418 ARFGEF1Q9Y6D6 1849 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 MYH6P13533 1939 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 LTBP3Q9NS15 1303 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 FZD9O00144 591 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 MPHOSPH10O00566 681 aaKnown RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 WNT10BO00744 389 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 DDAH1O94760 285 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 CALM1P0DP23 149 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 CALM2P0DP24 149 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 CALM3P0DP25 149 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 PDIA4P13667 645 aaKnown RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 GMPSP49915 693 aaPredicted RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 FUT2Q10981 343 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 SAMD7Q7Z3H4 446 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 SRBD1Q8N5C6 995 aaKnown RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 CTCFLQ8NI51 663 aaPredicted RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 DHX36Q9H2U1 1008 aaKnown RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 MYOZ2Q9NPC6 264 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 DDX49Q9Y6V7 483 aaKnown RBP10.64□□□□□ -0.71
CPNE4-213ENST00000515418 NID2Q14112 1375 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 ZNF541Q9H0D2 1346 aa10.64□□□□□ -0.71
CPNE4-213ENST00000515418 SIPA1L1O43166 1804 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 GOLGA8HP0CJ92 632 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 VEGFAP15692 232 aaPredicted RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 RCAN1P53805 252 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 CEBPZQ03701 1054 aaKnown RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 SPDYE2Q495Y8 402 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 KRT40Q6A162 431 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 TRIM22Q8IYM9 498 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 GPT2Q8TD30 523 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 CSRNP1Q96S65 589 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 FTOQ9C0B1 505 aaKnown RBP eCLIP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 TMEM39BQ9GZU3 492 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 MTMR4Q9NYA4 1195 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 CLIP2Q9UDT6 1046 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 SWAP70Q9UH65 585 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 CNOT7Q9UIV1 285 aaKnown RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 KCNJ14Q9UNX9 436 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 ASTN2O75129 1339 aaPredicted RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 KIF28PB7ZC32 967 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 ENTPD3O75355 529 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 NPM3O75607 178 aaKnown RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 JAG1P78504 1218 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 RRP1BQ14684 758 aaKnown RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 TBC1D10BQ4KMP7 808 aaPredicted RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 FOXP4Q8IVH2 680 aaPredicted RBP10.63□□□□□ -0.71
CPNE4-213ENST00000515418 MICALL2Q8IY33 904 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 EHD4Q9H223 541 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 CPVLQ9H3G5 476 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 TMOD2Q9NZR1 351 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 MAD2L2Q9UI95 211 aa10.63□□□□□ -0.71
CPNE4-213ENST00000515418 GDF11O95390 407 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 YBX3P16989 372 aaKnown RBP eCLIP10.62□□□□□ -0.71
CPNE4-213ENST00000515418 ATP2B2Q01814 1243 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 PPP2R5BQ15173 497 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 PKN1Q16512 942 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 CERKLQ49MI3 558 aaPredicted RBP10.62□□□□□ -0.71
CPNE4-213ENST00000515418 CCDC178Q5BJE1 867 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 USP17L2Q6R6M4 530 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 TMTC3Q6ZXV5 915 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 MIGA2Q7L4E1 593 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 LRRC47Q8N1G4 583 aaKnown RBP10.62□□□□□ -0.71
CPNE4-213ENST00000515418 MTMR14Q8NCE2 650 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 SHISA4Q96DD7 197 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 ZBED3Q96IU2 234 aaPredicted RBP10.62□□□□□ -0.71
CPNE4-213ENST00000515418 TRIM34Q9BYJ4 488 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 ZSCAN16Q9H4T2 348 aaPredicted RBP10.62□□□□□ -0.71
CPNE4-213ENST00000515418 RBM28Q9NW13 759 aaKnown RBP10.62□□□□□ -0.71
CPNE4-213ENST00000515418 CNTNAP1P78357 1384 aa10.62□□□□□ -0.71
CPNE4-213ENST00000515418 IGKV6D-41A0A0C4DH26 115 aa10.61□□□□□ -0.71
CPNE4-213ENST00000515418 USP17L5A8MUK1 530 aa10.61□□□□□ -0.71
CPNE4-213ENST00000515418 TOP1P11387 765 aaKnown RBP10.61□□□□□ -0.71
CPNE4-213ENST00000515418 AKAP17AQ02040 695 aaKnown RBP10.61□□□□□ -0.71
CPNE4-213ENST00000515418 SLC35G1Q2M3R5 365 aa10.61□□□□□ -0.71
CPNE4-213ENST00000515418 FAM151AQ8WW52 585 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms