RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SYNCQ9H7C4 482 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 RASAL2Q9UJF2 1139 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 ZBTB1Q9Y2K1 713 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 CARMIL3Q8ND23 1372 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 A0A1W2PQ27 194 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 A0A1W2PQ64 194 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 A0A1W2PQD8 194 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 GOLGA8HP0CJ92 632 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 OAS2P29728 719 aaKnown RBP14.16□□□□□ -0.14
USP53-209ENST00000514665 GGA1Q9UJY5 639 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 ATP6V0A2Q9Y487 856 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 SLC1A4P43007 532 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 TCP10Q12799 353 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 MAEAQ7L5Y9 396 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 ARFGAP2Q8N6H7 521 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 OR8K1Q8NGG5 319 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 PUS7LQ9H0K6 701 aaKnown RBP14.16□□□□□ -0.14
USP53-209ENST00000514665 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.16□□□□□ -0.14
USP53-209ENST00000514665 MYCNP04198 464 aaPredicted RBP14.15□□□□□ -0.14
USP53-209ENST00000514665 UBE3CQ15386 1083 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 TYW1BQ6NUM6 668 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 RRAGAQ7L523 313 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 C2CD5Q86YS7 1000 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 PNMA1Q8ND90 353 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 UBLCP1Q8WVY7 318 aaPredicted RBP14.15□□□□□ -0.14
USP53-209ENST00000514665 FAM212AQ96EL1 285 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 HDAC9Q9UKV0 1011 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 SMCO2A6NFE2 343 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 CALCRLQ16602 461 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 SLC9C1Q4G0N8 1177 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 GIGYF2Q6Y7W6 1299 aaKnown RBP14.15□□□□□ -0.14
USP53-209ENST00000514665 LINC00301Q8NCQ3 95 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 HINFPQ9BQA5 517 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 TSGA10Q9BZW7 698 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 INCENPQ9NQS7 918 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 BIN2Q9UBW5 565 aaPredicted RBP14.15□□□□□ -0.14
USP53-209ENST00000514665 ZDHHC9Q9Y397 364 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 GABPB1Q06547 395 aaPredicted RBP14.15□□□□□ -0.14
USP53-209ENST00000514665 NCAPH2Q6IBW4 605 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 GRAMD1CQ8IYS0 662 aa14.15□□□□□ -0.14
USP53-209ENST00000514665 ADCY7P51828 1080 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 NR5A1Q13285 461 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 SND1Q7KZF4 910 aaKnown RBP eCLIP14.14□□□□□ -0.15
USP53-209ENST00000514665 GSTA5Q7RTV2 222 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 CCDC50Q8IVM0 306 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 BLIDQ8IZY5 108 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 IKBKGQ9Y6K9 419 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 CDK12Q9NYV4 1490 aaPredicted RBP14.14□□□□□ -0.15
USP53-209ENST00000514665 PRKAB2O43741 272 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 KLHL7Q8IXQ5 586 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 SMYD4Q8IYR2 804 aaPredicted RBP14.14□□□□□ -0.15
USP53-209ENST00000514665 NUP58Q9BVL2 599 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 HOMER2Q9NSB8 354 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 ERBB3P21860 1342 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 KCNJ18B7U540 433 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 IGKV5-2P06315 115 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 EPB41P11171 864 aaKnown RBP14.14□□□□□ -0.15
USP53-209ENST00000514665 CHRNDQ07001 517 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 KCNJ12Q14500 433 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 AFAP1L1Q8TED9 768 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 KIF2CQ99661 725 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 EFCAB6Q5THR3 1501 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 MAP3K15Q6ZN16 1313 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 CEP104O60308 925 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 KIF23Q02241 960 aaPredicted RBP14.14□□□□□ -0.15
USP53-209ENST00000514665 RESTQ13127 1097 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 NOX5Q96PH1 765 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 SEC31BQ9NQW1 1179 aa14.14□□□□□ -0.15
USP53-209ENST00000514665 KIF4AO95239 1232 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 USH1GQ495M9 461 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 DPH6Q7L8W6 267 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 CCDC84Q86UT8 332 aaPredicted RBP14.13□□□□□ -0.15
USP53-209ENST00000514665 SYMPKQ92797 1274 aaKnown RBP14.13□□□□□ -0.15
USP53-209ENST00000514665 EYA3Q99504 573 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 CCDC77Q9BR77 488 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 IFIH1Q9BYX4 1025 aaKnown RBP14.13□□□□□ -0.15
USP53-209ENST00000514665 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP53-209ENST00000514665 FRMD4BQ9Y2L6 1034 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 ZFYVE16Q7Z3T8 1539 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 MLH3Q9UHC1 1453 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 NDUFAB1O14561 156 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 BACH1O14867 736 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 TECP42680 631 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 KLHL30Q0D2K2 578 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 MORC3Q14149 939 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 IMPG2Q9BZV3 1241 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 GPR108Q9NPR9 543 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 SCG2P13521 617 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 ARID5BQ14865 1188 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 ANKRD13CQ8N6S4 541 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 CSRNP2Q9H175 543 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 POLR3EQ9NVU0 708 aa14.13□□□□□ -0.15
USP53-209ENST00000514665 PREX2Q70Z35 1606 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 CDC25AP30304 524 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 TUBB2AQ13885 445 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 HAUS3Q68CZ6 603 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 CCDC121Q6ZUS5 278 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 CEP57Q86XR8 500 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 TUBB2BQ9BVA1 445 aa14.12□□□□□ -0.15
USP53-209ENST00000514665 SAR1BQ9Y6B6 198 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms