RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 MESP2Q0VG99 397 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 FAM196AQ6ZSG2 479 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 ARHGAP27Q6ZUM4 889 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 CDC37L1Q7L3B6 337 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 KCT2Q8NC54 265 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 ZNF507Q8TCN5 953 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 ZNF296Q8WUU4 475 aaPredicted RBP6.14□□□□□ -1.43
NUP54-212ENST00000513248 PLAGL2Q9UPG8 496 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 PRR36Q9H6K5 1346 aa6.14□□□□□ -1.43
NUP54-212ENST00000513248 MINDY4BA8MYZ0 360 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 LEFTY1O75610 366 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 F13A1P00488 732 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 CD96P40200 585 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 RPL6Q02878 288 aaKnown RBP6.13□□□□□ -1.43
NUP54-212ENST00000513248 C9orf131Q5VYM1 1079 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 USP48Q86UV5 1035 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 TOP6BLQ8N6T0 577 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 EAF1Q96JC9 268 aaPredicted RBP6.13□□□□□ -1.43
NUP54-212ENST00000513248 NT5C1AQ9BXI3 368 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 TGIF2Q9GZN2 237 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 WNT10AQ9GZT5 417 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 PCDHGB7Q9Y5F8 929 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 ROBO2Q9HCK4 1378 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 PDS5BQ9NTI5 1447 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 WIZO95785 1651 aa6.13□□□□□ -1.43
NUP54-212ENST00000513248 IGF2BP3O00425 579 aaKnown RBP eCLIP6.12□□□□□ -1.43
NUP54-212ENST00000513248 CUX2O14529 1486 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 CRKP46108 304 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 ETF1P62495 437 aaKnown RBP6.12□□□□□ -1.43
NUP54-212ENST00000513248 FAM160A1Q05DH4 1040 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 ZSWIM9Q86XI8 627 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 GOLM1Q8NBJ4 401 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 FBXO27Q8NI29 283 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 ASB11Q8WXH4 323 aa6.12□□□□□ -1.43
NUP54-212ENST00000513248 JARID2Q92833 1246 aaPredicted RBP6.12□□□□□ -1.43
NUP54-212ENST00000513248 RSF1Q96T23 1441 aaPredicted RBP6.11□□□□□ -1.43
NUP54-212ENST00000513248 CADPSQ9ULU8 1353 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 LRRC10BA6NIK2 292 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 GJA8P48165 433 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 MPP2Q14168 576 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 DIEXFQ68CQ4 756 aaKnown RBP6.11□□□□□ -1.43
NUP54-212ENST00000513248 ARMCX6Q7L4S7 300 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 CILP2Q8IUL8 1156 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 SLITRK4Q8IW52 837 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 ZNF654Q8IZM8 581 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 RASGRP4Q8TDF6 673 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 FBRSQ9HAH7 460 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 PRDM10Q9NQV6 1147 aa6.11□□□□□ -1.43
NUP54-212ENST00000513248 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.11□□□□□ -1.43
NUP54-212ENST00000513248 POLR3KQ9Y2Y1 108 aaPredicted RBP6.11□□□□□ -1.43
NUP54-212ENST00000513248 SUPT16HQ9Y5B9 1047 aaKnown RBP6.11□□□□□ -1.43
NUP54-212ENST00000513248 LAMC3Q9Y6N6 1575 aa6.1□□□□□ -1.43
NUP54-212ENST00000513248 TSPAN15O95858 294 aa6.1□□□□□ -1.43
NUP54-212ENST00000513248 GRK4P32298 578 aa6.1□□□□□ -1.43
NUP54-212ENST00000513248 CAP2P40123 477 aa6.1□□□□□ -1.43
NUP54-212ENST00000513248 FAM214BQ7L5A3 538 aa6.1□□□□□ -1.43
NUP54-212ENST00000513248 GTF2IRD1Q9UHL9 959 aa6.1□□□□□ -1.43
NUP54-212ENST00000513248 LRIG2O94898 1065 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 ATE1O95260 518 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 BPNT1O95861 308 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 SLBPQ14493 270 aaKnown RBP eCLIP6.09□□□□□ -1.43
NUP54-212ENST00000513248 KCNMB1Q16558 191 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 NKG7Q16617 165 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 SNAP47Q5SQN1 464 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 REC114Q7Z4M0 266 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 KIAA0825Q8IV33 1275 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 HID1Q8IV36 788 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 HEXIM2Q96MH2 286 aaKnown RBP6.09□□□□□ -1.43
NUP54-212ENST00000513248 PPP1R16BQ96T49 567 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 SPON2Q9BUD6 331 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 FOXQ1Q9C009 403 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 EHMT1Q9H9B1 1298 aa6.09□□□□□ -1.43
NUP54-212ENST00000513248 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.09□□□□□ -1.43
NUP54-212ENST00000513248 ZNF503-AS2A6NEH8 195 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 PGRP06401 933 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 ITIH2P19823 946 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 CLCN7P51798 805 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 TMEM201Q5SNT2 666 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 SPACA3Q8IXA5 215 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 REXO1Q8N1G1 1221 aaKnown RBP6.08□□□□□ -1.44
NUP54-212ENST00000513248 TOX2Q96NM4 488 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 UBP1Q9NZI7 540 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 LMCD1Q9NZU5 365 aa6.08□□□□□ -1.44
NUP54-212ENST00000513248 CST3P01034 146 aaPredicted RBP6.07□□□□□ -1.44
NUP54-212ENST00000513248 RAP1GAPP47736 663 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 PDE4BQ07343 736 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 PAK2Q13177 524 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 IKZF1Q13422 519 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 PRAMEF13Q5VWM6 474 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 NPM2Q86SE8 214 aaKnown RBP6.07□□□□□ -1.44
NUP54-212ENST00000513248 MIPEPQ99797 713 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 TINF2Q9BSI4 451 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 KRTAP4-11Q9BYQ6 195 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 ACBD3Q9H3P7 528 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 ADAM30Q9UKF2 790 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 CTNND2Q9UQB3 1225 aa6.07□□□□□ -1.44
NUP54-212ENST00000513248 TOP2AP11388 1531 aaKnown RBP6.06□□□□□ -1.44
NUP54-212ENST00000513248 SLITRK5O94991 958 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 EOMESO95936 686 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 ERCC5P28715 1186 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms