RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TAF3Q5VWG9 929 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 RSRC2Q7L4I2 434 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 ADGRA1Q86SQ6 560 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 TMTC2Q8N394 836 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 MROH5Q6ZUA9 1318 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 SYNRGQ9UMZ2 1314 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 APTXQ7Z2E3 356 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 ACRBPQ8NEB7 543 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 BAZ2BQ9UIF8 2168 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 KIF1AQ12756 1690 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 KIF5CO60282 957 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 DPYDQ12882 1025 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 RABGGTAQ92696 567 aa10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 CDC5LQ99459 802 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-215ENST00000512632 N4BP3O15049 544 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 CHMP4BP1P59074 171 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 FILIP1LQ4L180 1135 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 RNF41Q9H4P4 317 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 ADD3Q9UEY8 706 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 TNS2Q63HR2 1409 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 XBP1P17861 261 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 LONRF2Q1L5Z9 754 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 ELOA2Q8IYF1 753 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 SPATA20Q8TB22 786 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 ESR2Q92731 530 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 CTNND2Q9UQB3 1225 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 ATRNO75882 1429 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 RHOXF2BP0C7M4 288 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 KRT2P35908 639 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 DYNLL1P63167 89 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 PTGDRQ13258 359 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 PKN1Q16512 942 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 RHOXF2Q9BQY4 288 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 FUT8Q9BYC5 575 aa10.51□□□□□ -0.73
LIMCH1-215ENST00000512632 GYG1P46976 350 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 EVX2Q03828 476 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 RRAGBQ5VZM2 374 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 SLC35F6Q8N357 371 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 ENAHQ8N8S7 591 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 SUGCTQ9HAC7 445 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 AATFQ9NY61 560 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 CALCOCO1Q9P1Z2 691 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 AKAP11Q9UKA4 1901 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 RNF225M0QZC1 329 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 VEGFAP15692 232 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 GNAT2P19087 354 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 CUL4BQ13620 913 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 SLC4A8Q2Y0W8 1093 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 PANX2Q96RD6 677 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 TAB2Q9NYJ8 693 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 COL5A2P05997 1499 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 PPP1R3GB7ZBB8 358 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 PES1O00541 588 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 TXLNAP40222 546 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 SEC23AQ15436 765 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 IFIT1BQ5T764 474 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 WWC2Q6AWC2 1192 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 RNF26Q9BY78 433 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 MYO5AQ9Y4I1 1855 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 SRGAP1Q7Z6B7 1085 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 SOS2Q07890 1332 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 C4AP0C0L4 1744 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 C4BP0C0L5 1744 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 NUP188Q5SRE5 1749 aa10.5□□□□□ -0.73
LIMCH1-215ENST00000512632 MAGEB6P1A0A0J9YX57 407 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 GYPCP04921 128 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 IGHMBP2P38935 993 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 CATIPQ7Z7H3 387 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 ZNF34Q8IZ26 560 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 BTG4Q9NY30 223 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 PKD1L3Q7Z443 1732 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 LAMB4A4D0S4 1761 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 MFAP3LO75121 409 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 TTC38Q5R3I4 469 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 SLF1Q9BQI6 1058 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 RNF216Q9NWF9 866 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 CDC23Q9UJX2 597 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 NMT2O60551 498 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 MCM7P33993 719 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 CHRNDQ07001 517 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 PIK3AP1Q6ZUJ8 805 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 EEF2KMTQ96G04 330 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 NUP88Q99567 741 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 H3BQF6 201 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 ADAMTS3O15072 1205 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 KRT31Q15323 416 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 ZSCAN10Q96SZ4 725 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 PNKPQ96T60 521 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 PLEKHG2Q9H7P9 1386 aa10.49□□□□□ -0.73
LIMCH1-215ENST00000512632 PNPLA7Q6ZV29 1317 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 ATP8B1O43520 1251 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 CDKAL1Q5VV42 579 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 JAKMIP3Q5VZ66 844 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 SH3RF1Q7Z6J0 888 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 GSDMAQ96QA5 445 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 PHF20Q9BVI0 1012 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 FAM47AQ5JRC9 791 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 SLAIN2Q9P270 581 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 CCDC151A5D8V7 595 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms