RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 ICA1Q05084 483 aa20.22■□□□□ 0.83
HDAC6-235ENST00000495515 SHROOM1Q2M3G4 852 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-235ENST00000495515 OTUD7BQ6GQQ9 843 aa20.22■□□□□ 0.83
HDAC6-235ENST00000495515 FASTKD5Q7L8L6 764 aaKnown RBP20.22■□□□□ 0.83
HDAC6-235ENST00000495515 CCDC84Q86UT8 332 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-235ENST00000495515 CCL15-CCL14A0A0B4J2E2 113 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 ZKSCAN1P17029 563 aaPredicted RBP20.21■□□□□ 0.83
HDAC6-235ENST00000495515 BACE1P56817 501 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 MAP2K1Q02750 393 aaPredicted RBP20.21■□□□□ 0.83
HDAC6-235ENST00000495515 NECTIN1Q15223 517 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 CCL15Q16663 113 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 FAM47AQ5JRC9 791 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 CREB3L3Q68CJ9 461 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 INCENPQ9NQS7 918 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 PLIN4Q96Q06 1357 aa20.21■□□□□ 0.83
HDAC6-235ENST00000495515 THSD7BQ9C0I4 1608 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 A0A0G2JLL6 359 aaPredicted RBP20.2■□□□□ 0.82
HDAC6-235ENST00000495515 TESPA1A2RU30 521 aaPredicted RBP20.2■□□□□ 0.82
HDAC6-235ENST00000495515 SLC27A2O14975 620 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 TM4SF4P48230 202 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 USP14P54578 494 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 COL13A1Q5TAT6 717 aaPredicted RBP20.2■□□□□ 0.82
HDAC6-235ENST00000495515 PRRT2Q7Z6L0 340 aaPredicted RBP20.2■□□□□ 0.82
HDAC6-235ENST00000495515 RALYLQ86SE5 291 aaKnown RBP20.2■□□□□ 0.82
HDAC6-235ENST00000495515 MS4A4AQ96JQ5 239 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 BEGAINQ9BUH8 593 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 TMOD4Q9NZQ9 345 aa20.2■□□□□ 0.82
HDAC6-235ENST00000495515 MCCP23508 829 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 ATP2B2Q01814 1243 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 MTMR2Q13614 643 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 CCDC178Q5BJE1 867 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 USP17L2Q6R6M4 530 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 IQCA1Q86XH1 822 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 NCOA7Q8NI08 942 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 ZIC5Q96T25 663 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.19■□□□□ 0.82
HDAC6-235ENST00000495515 KIAA1683Q9H0B3 1180 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 NYAP2Q9P242 653 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 TACC3Q9Y6A5 838 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 NEDD4P46934 1319 aa20.19■□□□□ 0.82
HDAC6-235ENST00000495515 IGKV6D-41A0A0C4DH26 115 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 E7EWF7 191 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 KDM4AO75164 1064 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 TTLL1O95922 423 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 ALDH1A1P00352 501 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 EEF2P13639 858 aaKnown RBP20.18■□□□□ 0.82
HDAC6-235ENST00000495515 SH3D19Q5HYK7 790 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 PROCA1Q8NCQ7 364 aaPredicted RBP20.18■□□□□ 0.82
HDAC6-235ENST00000495515 BRI3BPQ8WY22 251 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 CEP95Q96GE4 821 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 TCP11L1Q9NUJ3 509 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 MTMR4Q9NYA4 1195 aa20.18■□□□□ 0.82
HDAC6-235ENST00000495515 B4E1Z4 1266 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 HMGCS2P54868 508 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 KRT32Q14532 448 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 GADL1Q6ZQY3 521 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 IFNL1Q8IU54 200 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 ACER1Q8TDN7 264 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 ZCCHC17Q9NP64 241 aaKnown RBP20.17■□□□□ 0.82
HDAC6-235ENST00000495515 SYNPO2Q9UMS6 1093 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 TMX2Q9Y320 296 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 PCNTO95613 3336 aa20.17■□□□□ 0.82
HDAC6-235ENST00000495515 HSPA4P34932 840 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 PABPC4Q13310 644 aaKnown RBP eCLIP20.16■□□□□ 0.82
HDAC6-235ENST00000495515 ANKRD23Q86SG2 305 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 USP26Q9BXU7 913 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 GOPCQ9HD26 462 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 CLIP2Q9UDT6 1046 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 STX8Q9UNK0 236 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 LAMA4Q16363 1823 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 ATAD5Q96QE3 1844 aa20.16■□□□□ 0.82
HDAC6-235ENST00000495515 CA12O43570 354 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 TSGA10IPQ3SY00 556 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 CLEC10AQ8IUN9 316 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 C12orf42Q96LP6 360 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 TTC14Q96N46 770 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 UBAC1Q9BSL1 405 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 ZSWIM5Q9P217 1185 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 AGTPBP1Q9UPW5 1226 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 MYH8P13535 1937 aa20.15■□□□□ 0.82
HDAC6-235ENST00000495515 A0A1W2PRG0 241 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 SART3Q15020 963 aaKnown RBP20.14■□□□□ 0.81
HDAC6-235ENST00000495515 ZYXQ15942 572 aaKnown RBP20.14■□□□□ 0.81
HDAC6-235ENST00000495515 SIAH1Q8IUQ4 282 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 LPAR1Q92633 364 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 MKL1Q969V6 931 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 VCPKMTQ9H867 229 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 IL17RBQ9NRM6 502 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 SLC45A1Q9Y2W3 748 aa20.14■□□□□ 0.81
HDAC6-235ENST00000495515 BTBD19C9JJ37 291 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 IGF2BP3O00425 579 aaKnown RBP eCLIP20.13■□□□□ 0.81
HDAC6-235ENST00000495515 MOGSQ13724 837 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 C8orf34Q49A92 452 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 STOX1Q6ZVD7 989 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 DGKHQ86XP1 1220 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 TNS4Q8IZW8 715 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 KCNB2Q92953 911 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 ZSCAN10Q96SZ4 725 aaPredicted RBP20.13■□□□□ 0.81
HDAC6-235ENST00000495515 PTPN18Q99952 460 aa20.13■□□□□ 0.81
HDAC6-235ENST00000495515 EMILIN3Q9NT22 766 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms