RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 STK3Q13188 491 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 SHROOM1Q2M3G4 852 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-231ENST00000494043 PPP4R3BQ5MIZ7 849 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 USP48Q86UV5 1035 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 ZNF526Q8TF50 670 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-231ENST00000494043 GTF3C6Q969F1 213 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 ZNF341Q9BYN7 854 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 CABP5Q9NP86 173 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 MTMR4Q9NYA4 1195 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 NAP1L2Q9ULW6 460 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-231ENST00000494043 STX8Q9UNK0 236 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 CLEC11AQ9Y240 323 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 SLC12A7Q9Y666 1083 aa13.36□□□□□ -0.27
MCF2L-231ENST00000494043 NID2Q14112 1375 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 ZBTB43O43298 467 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 GH2P01242 217 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 GUCY1A2P33402 732 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 CAP2P40123 477 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 RCAN1P53805 252 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 JAG1P78504 1218 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 DLK2Q6UY11 383 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 SYNE3Q6ZMZ3 975 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 CDC37L1Q7L3B6 337 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 CATIPQ7Z7H3 387 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 LDHDQ86WU2 507 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 CLEC10AQ8IUN9 316 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 CCDC83Q8IWF9 413 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 ZNF654Q8IZM8 581 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 NECAB1Q8N987 351 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 CDCA5Q96FF9 252 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 GLIS2Q9BZE0 524 aaPredicted RBP13.35□□□□□ -0.27
MCF2L-231ENST00000494043 SLKQ9H2G2 1235 aaPredicted RBP13.35□□□□□ -0.27
MCF2L-231ENST00000494043 KAT14Q9H8E8 782 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 ZNF112Q9UJU3 913 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 ZBTB21Q9ULJ3 1066 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 HPS5Q9UPZ3 1129 aa13.35□□□□□ -0.27
MCF2L-231ENST00000494043 POLR2AP24928 1970 aaKnown RBP13.34□□□□□ -0.27
MCF2L-231ENST00000494043 GOLGA8AA7E2F4 631 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 DDAH1O94760 285 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 TTLL1O95922 423 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 HSP90AA1P07900 732 aaKnown RBP13.34□□□□□ -0.27
MCF2L-231ENST00000494043 TOP1P11387 765 aaKnown RBP13.34□□□□□ -0.27
MCF2L-231ENST00000494043 METAP2P50579 478 aaKnown RBP eCLIP13.34□□□□□ -0.27
MCF2L-231ENST00000494043 ICA1Q05084 483 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 SCRN1Q12765 414 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 SEPT2Q15019 361 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 MICU3Q86XE3 530 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 RAB11FIP4Q86YS3 637 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 PNMA1Q8ND90 353 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 INTS4Q96HW7 963 aaKnown RBP13.34□□□□□ -0.27
MCF2L-231ENST00000494043 TMEM47Q9BQJ4 181 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 MYL10Q9BUA6 226 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 KANSL2Q9H9L4 492 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 GINM1Q9NU53 330 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 NYAP2Q9P242 653 aa13.34□□□□□ -0.27
MCF2L-231ENST00000494043 CTNND1O60716 968 aaKnown RBP13.33□□□□□ -0.28
MCF2L-231ENST00000494043 ASNSP08243 561 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 CALM1P0DP23 149 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 CALM2P0DP24 149 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 CALM3P0DP25 149 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 RXRAP19793 462 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 TROAPQ12815 778 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 RAB3GAP1Q15042 981 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 WRNIP1Q96S55 665 aa13.33□□□□□ -0.28
MCF2L-231ENST00000494043 NCOA5Q9HCD5 579 aaKnown RBP13.33□□□□□ -0.28
MCF2L-231ENST00000494043 EEF2P13639 858 aaKnown RBP13.32□□□□□ -0.28
MCF2L-231ENST00000494043 INPP5BP32019 993 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 NF2P35240 595 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 CCT2P78371 535 aaKnown RBP13.32□□□□□ -0.28
MCF2L-231ENST00000494043 RTN1Q16799 776 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 MAP1SQ66K74 1059 aaPredicted RBP13.32□□□□□ -0.28
MCF2L-231ENST00000494043 LRRC47Q8N1G4 583 aaKnown RBP13.32□□□□□ -0.28
MCF2L-231ENST00000494043 SPRYD3Q8NCJ5 442 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 NUP133Q8WUM0 1156 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 CHMP4CQ96CF2 233 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 KLRG1Q96E93 195 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 CLIP2Q9UDT6 1046 aa13.32□□□□□ -0.28
MCF2L-231ENST00000494043 DOCK1Q14185 1865 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 PAPPA2Q9BXP8 1791 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 DHX16O60231 1041 aaKnown RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 PPP1R12BO60237 982 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 USP2O75604 605 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 ATP2B2Q01814 1243 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 PPP2R5BQ15173 497 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 NOL9Q5SY16 702 aaKnown RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 SIAH1Q8IUQ4 282 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 CCDC144CPQ8IYA2 1237 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 SCYL3Q8IZE3 742 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 FANCBQ8NB91 859 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 MKL1Q969V6 931 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 MAP3K14Q99558 947 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 LLPHQ9BRT6 129 aaKnown RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 FAM217BQ9NTX9 383 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 SYNPO2Q9UMS6 1093 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 FZD1Q9UP38 647 aa13.31□□□□□ -0.28
MCF2L-231ENST00000494043 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.31□□□□□ -0.28
MCF2L-231ENST00000494043 ATAD5Q96QE3 1844 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms