RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 RANBP6O60518 1105 aaKnown RBP12.87□□□□□ -0.35
VPS13D-210ENST00000489961 EIF5BO60841 1220 aaKnown RBP12.87□□□□□ -0.35
VPS13D-210ENST00000489961 TFAP4Q01664 338 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 ICA1Q05084 483 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 FASTKD5Q7L8L6 764 aaKnown RBP12.87□□□□□ -0.35
VPS13D-210ENST00000489961 PRRT2Q7Z6L0 340 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-210ENST00000489961 TBC1D10CQ8IV04 446 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 NEDD1Q8NHV4 660 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 ESR2Q92731 530 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 NBPF3Q9H094 633 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 SH2D4AQ9H788 454 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 CNNM2Q9H8M5 875 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 INCENPQ9NQS7 918 aa12.87□□□□□ -0.35
VPS13D-210ENST00000489961 PLIN4Q96Q06 1357 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 ALDH1A1P00352 501 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 CYP21A2P08686 494 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 USP14P54578 494 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 BACE1P56817 501 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 TRDNQ13061 729 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 MTMR2Q13614 643 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 FAM47AQ5JRC9 791 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 PPP4R3BQ5MIZ7 849 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 RNF20Q5VTR2 975 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 USP17L2Q6R6M4 530 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 GADL1Q6ZQY3 521 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 IFNL1Q8IU54 200 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 BRI3BPQ8WY22 251 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 KRT23Q9C075 422 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 TMOD4Q9NZQ9 345 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 TACC3Q9Y6A5 838 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 LOC285556D6RIA3 1793 aa12.86□□□□□ -0.35
VPS13D-210ENST00000489961 CA12O43570 354 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 HMGCS2P54868 508 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 ATP2B2Q01814 1243 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 SH3D19Q5HYK7 790 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 PROCA1Q8NCQ7 364 aaPredicted RBP12.85□□□□□ -0.35
VPS13D-210ENST00000489961 ACER1Q8TDN7 264 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS13D-210ENST00000489961 KIAA1683Q9H0B3 1180 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 WBP1LQ9NX94 342 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 MYH4Q9Y623 1939 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 NEDD4P46934 1319 aa12.85□□□□□ -0.35
VPS13D-210ENST00000489961 IGKV6D-41A0A0C4DH26 115 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 BTBD19C9JJ37 291 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 IGF2BP3O00425 579 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 SLC27A2O14975 620 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 EPB41L2O43491 1005 aaKnown RBP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 TTLL1O95922 423 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 EEF2P13639 858 aaKnown RBP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 PABPC4Q13310 644 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 NECTIN1Q15223 517 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 ZYXQ15942 572 aaKnown RBP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 CREB3L3Q68CJ9 461 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 RALYLQ86SE5 291 aaKnown RBP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 ANKRD23Q86SG2 305 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 CLEC10AQ8IUN9 316 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 CEP95Q96GE4 821 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 PTPN18Q99952 460 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 ZCCHC17Q9NP64 241 aaKnown RBP12.84□□□□□ -0.35
VPS13D-210ENST00000489961 MTMR4Q9NYA4 1195 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 NYAP2Q9P242 653 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 TMX2Q9Y320 296 aa12.84□□□□□ -0.35
VPS13D-210ENST00000489961 A0A1W2PRG0 241 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 B4E1Z4 1266 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 E7EWF7 191 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 KDM4AO75164 1064 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 ZKSCAN1P17029 563 aaPredicted RBP12.83□□□□□ -0.36
VPS13D-210ENST00000489961 MOGSQ13724 837 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 CCDC178Q5BJE1 867 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 IQCA1Q86XH1 822 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 SIAH1Q8IUQ4 282 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 FAM43AQ8N2R8 423 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 NCOA7Q8NI08 942 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 C12orf42Q96LP6 360 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 GOPCQ9HD26 462 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 TCP11L1Q9NUJ3 509 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 RNF186Q9NXI6 227 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 SAGE1Q9NXZ1 904 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 CLIP2Q9UDT6 1046 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 STX8Q9UNK0 236 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 AGTPBP1Q9UPW5 1226 aa12.83□□□□□ -0.36
VPS13D-210ENST00000489961 PDHXO00330 501 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 TRPA1O75762 1119 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 HSPA1AP0DMV8 641 aaKnown RBP12.82□□□□□ -0.36
VPS13D-210ENST00000489961 HSPA1BP0DMV9 641 aaKnown RBP12.82□□□□□ -0.36
VPS13D-210ENST00000489961 MCCP23508 829 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 TAF1CQ15572 869 aaPredicted RBP12.82□□□□□ -0.36
VPS13D-210ENST00000489961 GPAT2Q6NUI2 795 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 LPAR1Q92633 364 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 VCPKMTQ9H867 229 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 IL17RBQ9NRM6 502 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 EMILIN3Q9NT22 766 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 PNMA3Q9UL41 463 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 SYNPO2Q9UMS6 1093 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 SLC45A1Q9Y2W3 748 aa12.82□□□□□ -0.36
VPS13D-210ENST00000489961 RAD21O60216 631 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 NMT2O60551 498 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 OSBPP22059 807 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 HSPA4P34932 840 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 DGKZQ13574 1117 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms