RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 SPTLC2O15270 562 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 CAVIN2O95810 425 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 PPP4CP60510 307 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 ANO6Q4KMQ2 910 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 SPECC1Q5M775 1068 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 BRAPQ7Z569 592 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 NOL10Q9BSC4 688 aaKnown RBP16.68■□□□□ 0.26
CHD3-211ENST00000481999 MKNK2Q9HBH9 465 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 NID2Q14112 1375 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 MMP1P03956 469 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 GSTO1P78417 241 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 ATL3Q6DD88 541 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 LUZP1Q86V48 1076 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 STAG2Q8N3U4 1231 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 CBX8Q9HC52 389 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 POLR3EQ9NVU0 708 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 STX8Q9UNK0 236 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 TTF2Q9UNY4 1162 aaKnown RBP16.67■□□□□ 0.26
CHD3-211ENST00000481999 TOB1P50616 345 aaPredicted RBP16.67■□□□□ 0.26
CHD3-211ENST00000481999 CACNB3P54284 484 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 R3HDM1Q15032 1099 aaKnown RBP16.67■□□□□ 0.26
CHD3-211ENST00000481999 CLEC10AQ8IUN9 316 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 ENGASEQ8NFI3 743 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 PRIMPOLQ96LW4 560 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 DDX4Q9NQI0 724 aaKnown RBP16.67■□□□□ 0.26
CHD3-211ENST00000481999 NAV1Q8NEY1 1877 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 STK36Q9NRP7 1315 aa16.67■□□□□ 0.26
CHD3-211ENST00000481999 WNT7AO00755 349 aa16.66■□□□□ 0.26
CHD3-211ENST00000481999 U2AF2P26368 475 aaKnown RBP eCLIP16.66■□□□□ 0.26
CHD3-211ENST00000481999 GRIN1Q05586 938 aa16.66■□□□□ 0.26
CHD3-211ENST00000481999 MAP7D2Q96T17 732 aa16.66■□□□□ 0.26
CHD3-211ENST00000481999 PSDA5PKW4 1024 aaPredicted RBP16.66■□□□□ 0.26
CHD3-211ENST00000481999 DEXIO95424 95 aa16.66■□□□□ 0.26
CHD3-211ENST00000481999 HMGB2P26583 209 aaKnown RBP16.66■□□□□ 0.26
CHD3-211ENST00000481999 ALDH1B1P30837 517 aa16.66■□□□□ 0.26
CHD3-211ENST00000481999 AXDND1Q5T1B0 1012 aaPredicted RBP16.66■□□□□ 0.26
CHD3-211ENST00000481999 MAP3K14Q99558 947 aa16.66■□□□□ 0.26
CHD3-211ENST00000481999 LDHCP07864 332 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 SLC3A2P08195 630 aaKnown RBP16.65■□□□□ 0.26
CHD3-211ENST00000481999 GOLGA8HP0CJ92 632 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 TSPY3P0CV98 308 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 TSPY8P0CW00 308 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 RASA1P20936 1047 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 NOSTRINQ8IVI9 506 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 COA1Q9GZY4 146 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 DNAJC25Q9H1X3 360 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 CCDC196A0A1B0GTZ2 297 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 PTPAQ15257 358 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 ADALQ6DHV7 355 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 KIAA0825Q8IV33 1275 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 SPC24Q8NBT2 197 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 FLAD1Q8NFF5 587 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 KIAA1524Q8TCG1 905 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 SCN9AQ15858 1988 aa16.65■□□□□ 0.26
CHD3-211ENST00000481999 G3V3G9 751 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 CTAGE5O15320 804 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 SLC35G1Q2M3R5 365 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 DCAF8Q5TAQ9 597 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 CCDC73Q6ZRK6 1079 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 TMTC3Q6ZXV5 915 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 MTA3Q9BTC8 594 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 KCNF1Q9H3M0 494 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 PCDHB6Q9Y5E3 794 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 DDX60LQ5H9U9 1706 aaKnown RBP16.64■□□□□ 0.25
CHD3-211ENST00000481999 FAM205AQ6ZU69 1335 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 CNTNAP5Q8WYK1 1306 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 H0YIN7 160 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 CDK8P49336 464 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 ZNF165P49910 485 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 FAM160A1Q05DH4 1040 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 FMR1NBQ8N0W7 255 aaPredicted RBP16.64■□□□□ 0.25
CHD3-211ENST00000481999 PNMA1Q8ND90 353 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 MYRIPQ8NFW9 859 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 MRPS27Q92552 414 aaKnown RBP16.64■□□□□ 0.25
CHD3-211ENST00000481999 CABP5Q9NP86 173 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 GAKO14976 1311 aa16.64■□□□□ 0.25
CHD3-211ENST00000481999 YEATS4O95619 227 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 EIF6P56537 245 aaKnown RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 RBM10P98175 930 aaKnown RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 NFIAQ12857 509 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 SLC39A14Q15043 492 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 GPKOWQ92917 476 aaPredicted RBP eCLIP16.63■□□□□ 0.25
CHD3-211ENST00000481999 RNF26Q9BY78 433 aaPredicted RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 FAM13BQ9NYF5 915 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 SNED1Q8TER0 1413 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 DLEC1Q9Y238 1755 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 PCP11498 1178 aaKnown RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 AOC3Q16853 763 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 C11orf57Q6ZUT1 292 aaPredicted RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 ZNF444Q8N0Y2 327 aaPredicted RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 C17orf53Q8N3J3 647 aaPredicted RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 CTCFLQ8NI51 663 aaPredicted RBP16.63■□□□□ 0.25
CHD3-211ENST00000481999 KCNG4Q8TDN1 519 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 TBC1D22AQ8WUA7 517 aa16.63■□□□□ 0.25
CHD3-211ENST00000481999 AKAP17AQ02040 695 aaKnown RBP16.62■□□□□ 0.25
CHD3-211ENST00000481999 SHC4Q6S5L8 630 aa16.62■□□□□ 0.25
CHD3-211ENST00000481999 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.62■□□□□ 0.25
CHD3-211ENST00000481999 MTERF4Q7Z6M4 381 aaKnown RBP16.62■□□□□ 0.25
CHD3-211ENST00000481999 ZFPM1Q8IX07 1006 aa16.62■□□□□ 0.25
CHD3-211ENST00000481999 KAT14Q9H8E8 782 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms