RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 CRY2Q49AN0 593 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 TMTC3Q6ZXV5 915 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 CCDC125Q86Z20 511 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 NRBP1Q9UHY1 535 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 PYCARDQ9ULZ3 195 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 ATP2B1P20020 1258 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 ATP2B4P23634 1241 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 KRT2P35908 639 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 COL23A1Q86Y22 540 aaPredicted RBP12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 CTCFLQ8NI51 663 aaPredicted RBP12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 CABP5Q9NP86 173 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 KCNH3Q9ULD8 1083 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 PCDHB6Q9Y5E3 794 aa12.68□□□□□ -0.38
HLA-DMB-260ENST00000477537 NAV1Q8NEY1 1877 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 IGSF3O75054 1194 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 BAG3O95817 575 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 TPM2P07951 284 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 SLC15A2Q16348 729 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 SPECC1Q5M775 1068 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 C12orf60Q5U649 245 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 KIAA1524Q8TCG1 905 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 MRFAP1L1Q96HT8 127 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 BPIFA3Q9BQP9 254 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 NOL10Q9BSC4 688 aaKnown RBP12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 PHF20Q9BVI0 1012 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 CD209Q9NNX6 404 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 MKRN1Q9UHC7 482 aaKnown RBP12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 GGA1Q9UJY5 639 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 FBXO2Q9UK22 296 aaPredicted RBP12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 CNTNAP5Q8WYK1 1306 aa12.67□□□□□ -0.38
HLA-DMB-260ENST00000477537 LDHCP07864 332 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 PTPREP23469 700 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 GRIN1Q05586 938 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 DDR1Q08345 913 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 DNTTIP2Q5QJE6 756 aaKnown RBP12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 KRBA2Q6ZNG9 492 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 SRBD1Q8N5C6 995 aaKnown RBP12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 DYNLL2Q96FJ2 89 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 SPTLC3Q9NUV7 552 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 CEP131Q9UPN4 1083 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 BAZ2BQ9UIF8 2168 aaKnown RBP12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 FAM205CA6NFA0 338 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 PPP4CP60510 307 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 TFAP4Q01664 338 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 PNOCQ13519 176 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 LONRF3Q496Y0 759 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 ISM2Q6H9L7 571 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 AMOTL1Q8IY63 956 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 CNNM3Q8NE01 707 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 TGFBRAP1Q8WUH2 860 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 BRMS1Q9HCU9 246 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 FAM13BQ9NYF5 915 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 TUBE1Q9UJT0 475 aa12.66□□□□□ -0.38
HLA-DMB-260ENST00000477537 BBOX1O75936 387 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 TERF1P54274 439 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 LRMPQ12912 555 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 CCDC144BQ3MJ40 725 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 RCSD1Q6JBY9 416 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 METTL16Q86W50 562 aaKnown RBP12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 KAT14Q9H8E8 782 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 STK32BQ9NY57 414 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 CDK5RAP2Q96SN8 1893 aa12.65□□□□□ -0.38
HLA-DMB-260ENST00000477537 TRIM75PA6NK02 468 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 POLRMTO00411 1230 aaKnown RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 IL1R1P14778 569 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 EARS2Q5JPH6 523 aaKnown RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 MSL1Q68DK7 614 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 MAPKAPK5Q8IW41 473 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 RTFDC1Q9BY42 306 aaPredicted RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 MKNK2Q9HBH9 465 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 SAP30BPQ9UHR5 308 aaKnown RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 SRPRBQ9Y5M8 271 aaKnown RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 ROBO3Q96MS0 1386 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 HOXA10P31260 410 aaPredicted RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 KIF5BP33176 963 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 BTDP43251 543 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 TPM4P67936 248 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 TBC1D16Q8TBP0 767 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 CRAMP1Q96RY5 1269 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 IL17RBQ9NRM6 502 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 POLLQ9UGP5 575 aa12.64□□□□□ -0.39
HLA-DMB-260ENST00000477537 SMTNL1A8MU46 457 aa12.63□□□□□ -0.39
HLA-DMB-260ENST00000477537 SCG2P13521 617 aa12.63□□□□□ -0.39
HLA-DMB-260ENST00000477537 DGKHQ86XP1 1220 aa12.63□□□□□ -0.39
HLA-DMB-260ENST00000477537 CACTINQ8WUQ7 758 aaKnown RBP12.63□□□□□ -0.39
HLA-DMB-260ENST00000477537 TNFRSF25Q93038 417 aa12.63□□□□□ -0.39
HLA-DMB-260ENST00000477537 PODXL2Q9NZ53 605 aa12.63□□□□□ -0.39
HLA-DMB-260ENST00000477537 USP17L3A6NCW0 530 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 USP17L4A6NCW7 530 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 C6orf229H3BNL8 230 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 FOXN1O15353 648 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 POLR2DO15514 142 aaKnown RBP12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 TSPY3P0CV98 308 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 TSPY8P0CW00 308 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 NT5C2P49902 561 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 PLCD1P51178 756 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 NLRP5P59047 1200 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 NCAPHQ15003 741 aa12.62□□□□□ -0.39
HLA-DMB-260ENST00000477537 NPY5RQ15761 445 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms