RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 CCDC74BQ96LY2 380 aa9.06□□□□□ -0.96
CLK1-209ENST00000472679 CRBNQ96SW2 442 aa9.06□□□□□ -0.96
CLK1-209ENST00000472679 MRVI1Q9Y6F6 885 aa9.06□□□□□ -0.96
CLK1-209ENST00000472679 UBOX5O94941 541 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 TGFB1P01137 390 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 CYP27C1Q4G0S4 372 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 FAM169BQ8N8A8 192 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 ANAPC16Q96DE5 110 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 SLC9A7Q96T83 725 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 CEP131Q9UPN4 1083 aa9.05□□□□□ -0.96
CLK1-209ENST00000472679 COL17A1Q9UMD9 1497 aaPredicted RBP9.04□□□□□ -0.96
CLK1-209ENST00000472679 FAM86C2PA6NEL3 165 aa9.04□□□□□ -0.96
CLK1-209ENST00000472679 RGS13O14921 159 aa9.04□□□□□ -0.96
CLK1-209ENST00000472679 HOXA10P31260 410 aaPredicted RBP9.04□□□□□ -0.96
CLK1-209ENST00000472679 FAM181AQ8N9Y4 354 aa9.04□□□□□ -0.96
CLK1-209ENST00000472679 METTL22Q9BUU2 404 aaPredicted RBP9.04□□□□□ -0.96
CLK1-209ENST00000472679 LRRC4CQ9HCJ2 640 aa9.04□□□□□ -0.96
CLK1-209ENST00000472679 STRIP2Q9ULQ0 834 aa9.04□□□□□ -0.96
CLK1-209ENST00000472679 TPX2Q9ULW0 747 aaKnown RBP9.04□□□□□ -0.96
CLK1-209ENST00000472679 LEMD3Q9Y2U8 911 aa9.04□□□□□ -0.96
CLK1-209ENST00000472679 TNFRSF10CO14798 259 aa9.03□□□□□ -0.96
CLK1-209ENST00000472679 SSBP05455 408 aaKnown RBP eCLIP9.03□□□□□ -0.96
CLK1-209ENST00000472679 ZYXQ15942 572 aaKnown RBP9.03□□□□□ -0.96
CLK1-209ENST00000472679 PIM2Q9P1W9 311 aa9.03□□□□□ -0.96
CLK1-209ENST00000472679 PRR33A8MZF0 331 aa9.02□□□□□ -0.97
CLK1-209ENST00000472679 GBP1P32455 592 aa9.02□□□□□ -0.97
CLK1-209ENST00000472679 ETFBP38117 255 aa9.02□□□□□ -0.97
CLK1-209ENST00000472679 TM9SF2Q99805 663 aa9.02□□□□□ -0.97
CLK1-209ENST00000472679 TANGO6Q9C0B7 1094 aa9.02□□□□□ -0.97
CLK1-209ENST00000472679 PRDM5Q9NQX1 630 aaPredicted RBP9.02□□□□□ -0.97
CLK1-209ENST00000472679 CYP26A1O43174 497 aa9.01□□□□□ -0.97
CLK1-209ENST00000472679 GUCY2CP25092 1073 aa9.01□□□□□ -0.97
CLK1-209ENST00000472679 INTS3Q68E01 1043 aaKnown RBP9.01□□□□□ -0.97
CLK1-209ENST00000472679 TMEM192Q8IY95 271 aa9.01□□□□□ -0.97
CLK1-209ENST00000472679 GTF2IRD1Q9UHL9 959 aa9.01□□□□□ -0.97
CLK1-209ENST00000472679 MED26O95402 600 aa9□□□□□ -0.97
CLK1-209ENST00000472679 FOSL1P15407 271 aa9□□□□□ -0.97
CLK1-209ENST00000472679 OXCT1P55809 520 aa9□□□□□ -0.97
CLK1-209ENST00000472679 CPSF6Q16630 551 aaKnown RBP eCLIP9□□□□□ -0.97
CLK1-209ENST00000472679 UNC5AQ6ZN44 842 aa9□□□□□ -0.97
CLK1-209ENST00000472679 TAB3Q8N5C8 712 aaPredicted RBP9□□□□□ -0.97
CLK1-209ENST00000472679 OR6P1Q8NGX9 317 aa9□□□□□ -0.97
CLK1-209ENST00000472679 KREMEN1Q96MU8 473 aa9□□□□□ -0.97
CLK1-209ENST00000472679 ZNF408Q9H9D4 720 aa9□□□□□ -0.97
CLK1-209ENST00000472679 IGF2BP3O00425 579 aaKnown RBP eCLIP8.99□□□□□ -0.97
CLK1-209ENST00000472679 SMAD7O15105 426 aaKnown RBP8.99□□□□□ -0.97
CLK1-209ENST00000472679 CBX7O95931 251 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 ETV3P41162 512 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 SFRP5Q5T4F7 317 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 TTC6Q86TZ1 520 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 VWCEQ96DN2 955 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 TNKS2Q9H2K2 1166 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 ZC3H7BQ9UGR2 993 aaKnown RBP8.99□□□□□ -0.97
CLK1-209ENST00000472679 RNF112Q9ULX5 631 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 MAPK8IP1Q9UQF2 711 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 LTBP3Q9NS15 1303 aa8.99□□□□□ -0.97
CLK1-209ENST00000472679 A0A1W2PQH9 124 aa8.98□□□□□ -0.97
CLK1-209ENST00000472679 LRRN2O75325 713 aa8.98□□□□□ -0.97
CLK1-209ENST00000472679 ITIH2P19823 946 aa8.98□□□□□ -0.97
CLK1-209ENST00000472679 PPP2R5EQ16537 467 aa8.98□□□□□ -0.97
CLK1-209ENST00000472679 ZNF746Q6NUN9 644 aaPredicted RBP8.98□□□□□ -0.97
CLK1-209ENST00000472679 PLD6Q8N2A8 252 aaKnown RBP8.98□□□□□ -0.97
CLK1-209ENST00000472679 ZNF512BQ96KM6 892 aaPredicted RBP8.98□□□□□ -0.97
CLK1-209ENST00000472679 SLC6A18Q96N87 628 aa8.98□□□□□ -0.97
CLK1-209ENST00000472679 PLAGL2Q9UPG8 496 aa8.98□□□□□ -0.97
CLK1-209ENST00000472679 CCNFP41002 786 aa8.97□□□□□ -0.97
CLK1-209ENST00000472679 C19orf47Q8N9M1 422 aaKnown RBP8.97□□□□□ -0.97
CLK1-209ENST00000472679 Q96M66 194 aa8.97□□□□□ -0.97
CLK1-209ENST00000472679 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.97□□□□□ -0.97
CLK1-209ENST00000472679 ATP2B1P20020 1258 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 CYP7A1P22680 504 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 SSTR4P31391 388 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 RANGAP1P46060 587 aaPredicted RBP8.96□□□□□ -0.98
CLK1-209ENST00000472679 NKPD1Q17RQ9 610 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 ARHGAP27Q6ZUM4 889 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 RNF141Q8WVD5 230 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 DHX38Q92620 1227 aaKnown RBP8.96□□□□□ -0.98
CLK1-209ENST00000472679 PRKAG3Q9UGI9 489 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 CAPN6Q9Y6Q1 641 aa8.96□□□□□ -0.98
CLK1-209ENST00000472679 GNAT3A8MTJ3 354 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 CLEC3AO75596 197 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 CEACAM5P06731 702 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 ZNF865P0CJ78 1059 aaPredicted RBP8.95□□□□□ -0.98
CLK1-209ENST00000472679 CASP7P55210 303 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 MSMPQ1L6U9 139 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 NBPF12Q5TAG4 269 aaPredicted RBP8.95□□□□□ -0.98
CLK1-209ENST00000472679 C22orf34Q6ZV56 151 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 PPFIBP1Q86W92 1011 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 SREK1Q8WXA9 508 aaKnown RBP8.95□□□□□ -0.98
CLK1-209ENST00000472679 MKNK2Q9HBH9 465 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 PCDHB10Q9UN67 800 aa8.95□□□□□ -0.98
CLK1-209ENST00000472679 C9IYK1 514 aa8.94□□□□□ -0.98
CLK1-209ENST00000472679 COBLO75128 1261 aa8.94□□□□□ -0.98
CLK1-209ENST00000472679 GTF2F1P35269 517 aaKnown RBP eCLIP8.94□□□□□ -0.98
CLK1-209ENST00000472679 TNK2Q07912 1038 aa8.94□□□□□ -0.98
CLK1-209ENST00000472679 TDRD10Q5VZ19 366 aaKnown RBP8.94□□□□□ -0.98
CLK1-209ENST00000472679 SPACA3Q8IXA5 215 aa8.94□□□□□ -0.98
CLK1-209ENST00000472679 MFSD4AQ8N468 514 aa8.94□□□□□ -0.98
CLK1-209ENST00000472679 FBXL18Q96ME1 805 aa8.94□□□□□ -0.98
CLK1-209ENST00000472679 FAM86C1Q9NVL1 165 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms