RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 AEBP2Q6ZN18 517 aaPredicted RBP29.29■■■□□ 2.28
CLK1-209ENST00000472679 CHIC1Q5VXU3 224 aa28.73■■■□□ 2.19
CLK1-209ENST00000472679 PHF23Q9BUL5 403 aaPredicted RBP25.36■■□□□ 1.65
CLK1-209ENST00000472679 SENP3Q9H4L4 574 aaPredicted RBP24.7■■□□□ 1.54
CLK1-209ENST00000472679 PLPPR3Q6T4P5 718 aa23.37■■□□□ 1.33
CLK1-209ENST00000472679 FOXD1Q16676 465 aa22.98■■□□□ 1.27
CLK1-209ENST00000472679 PPP6R1Q9UPN7 881 aa22.33■■□□□ 1.17
CLK1-209ENST00000472679 ADRA2BP18089 450 aa22.3■■□□□ 1.16
CLK1-209ENST00000472679 PIAS4Q8N2W9 510 aaPredicted RBP21.68■■□□□ 1.06
CLK1-209ENST00000472679 MSH5O43196 834 aa21.01■□□□□ 0.95
CLK1-209ENST00000472679 PPP4R3CPQ6ZMV5 832 aa20.67■□□□□ 0.9
CLK1-209ENST00000472679 KCNA4P22459 653 aa20.46■□□□□ 0.87
CLK1-209ENST00000472679 SCAF1Q9H7N4 1312 aaKnown RBP20.26■□□□□ 0.83
CLK1-209ENST00000472679 MAPK8IP2Q13387 824 aaPredicted RBP20.2■□□□□ 0.82
CLK1-209ENST00000472679 NCBP3Q53F19 620 aaKnown RBP20.11■□□□□ 0.81
CLK1-209ENST00000472679 CNKSR2Q8WXI2 1034 aa20.01■□□□□ 0.79
CLK1-209ENST00000472679 NPM3O75607 178 aaKnown RBP19.9■□□□□ 0.78
CLK1-209ENST00000472679 DMRT2Q9Y5R5 561 aa19.78■□□□□ 0.76
CLK1-209ENST00000472679 RNF216Q9NWF9 866 aaPredicted RBP19.56■□□□□ 0.72
CLK1-209ENST00000472679 SLC4A1APQ9BWU0 796 aaKnown RBP19.48■□□□□ 0.71
CLK1-209ENST00000472679 HOXD11P31277 338 aaPredicted RBP19.45■□□□□ 0.7
CLK1-209ENST00000472679 DNAJC5BQ9UF47 199 aa19.22■□□□□ 0.67
CLK1-209ENST00000472679 EHMT2Q96KQ7 1210 aa19.2■□□□□ 0.66
CLK1-209ENST00000472679 DCAF8L1A6NGE4 600 aa18.92■□□□□ 0.62
CLK1-209ENST00000472679 CSRNP3Q8WYN3 585 aa18.9■□□□□ 0.62
CLK1-209ENST00000472679 ZBTB22O15209 634 aa18.87■□□□□ 0.61
CLK1-209ENST00000472679 POTEDQ86YR6 584 aa18.86■□□□□ 0.61
CLK1-209ENST00000472679 SLC4A2P04920 1241 aa18.78■□□□□ 0.6
CLK1-209ENST00000472679 FOXD4L1Q9NU39 408 aa18.7■□□□□ 0.58
CLK1-209ENST00000472679 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.562e-9■■□□□ 13
CLK1-209ENST00000472679 MYCNP04198 464 aaPredicted RBP18.33■□□□□ 0.52
CLK1-209ENST00000472679 U3KPZ7 1027 aaPredicted RBP18.29■□□□□ 0.52
CLK1-209ENST00000472679 RNF39Q9H2S5 420 aa18.08■□□□□ 0.48
CLK1-209ENST00000472679 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
CLK1-209ENST00000472679 ATXN8OSP0DMR3 200 aa18■□□□□ 0.47
CLK1-209ENST00000472679 HNRNPUL2Q1KMD3 747 aaKnown RBP18■□□□□ 0.47
CLK1-209ENST00000472679 SAMD1Q6SPF0 538 aaPredicted RBP17.99■□□□□ 0.47
CLK1-209ENST00000472679 ATF5Q9Y2D1 282 aaPredicted RBP17.94■□□□□ 0.46
CLK1-209ENST00000472679 C1QBPQ07021 282 aaKnown RBP17.82■□□□□ 0.44
CLK1-209ENST00000472679 SPINK5Q9NQ38 1064 aaPredicted RBP17.75■□□□□ 0.43
CLK1-209ENST00000472679 APLP2Q06481 763 aa17.74■□□□□ 0.43
CLK1-209ENST00000472679 CAPN15O75808 1086 aa17.61■□□□□ 0.41
CLK1-209ENST00000472679 TRHP20396 242 aaPredicted RBP17.59■□□□□ 0.41
CLK1-209ENST00000472679 ZNF219Q9P2Y4 722 aaPredicted RBP17.57■□□□□ 0.4
CLK1-209ENST00000472679 CACNB1Q02641 598 aaPredicted RBP17.45■□□□□ 0.38
CLK1-209ENST00000472679 POLA2Q14181 598 aa17.36■□□□□ 0.37
CLK1-209ENST00000472679 ABCB7O75027 752 aa17.34■□□□□ 0.37
CLK1-209ENST00000472679 DSG3P32926 999 aa17.29■□□□□ 0.36
CLK1-209ENST00000472679 MKRN4PQ13434 485 aaPredicted RBP17.15■□□□□ 0.34
CLK1-209ENST00000472679 FBLN2P98095 1184 aa17.04■□□□□ 0.32
CLK1-209ENST00000472679 FKBP8Q14318 412 aa17.04■□□□□ 0.32
CLK1-209ENST00000472679 ZBTB12Q9Y330 459 aaPredicted RBP16.99■□□□□ 0.31
CLK1-209ENST00000472679 SPDYE4A6NLX3 237 aa16.8■□□□□ 0.28
CLK1-209ENST00000472679 OSCARQ8IYS5 282 aa16.77■□□□□ 0.28
CLK1-209ENST00000472679 SPDYE2BA6NHP3 402 aa16.59■□□□□ 0.25
CLK1-209ENST00000472679 SPDYE6P0CI01 402 aa16.59■□□□□ 0.25
CLK1-209ENST00000472679 SPDYE2Q495Y8 402 aa16.59■□□□□ 0.25
CLK1-209ENST00000472679 ZNF692Q9BU19 519 aaPredicted RBP16.59■□□□□ 0.25
CLK1-209ENST00000472679 PROM2Q8N271 834 aa16.57■□□□□ 0.24
CLK1-209ENST00000472679 SSUH2Q9Y2M2 353 aa16.52■□□□□ 0.24
CLK1-209ENST00000472679 PABPN1Q86U42 306 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLK1-209ENST00000472679 RBM42Q9BTD8 480 aaKnown RBP16.37■□□□□ 0.21
CLK1-209ENST00000472679 FBXO3Q9UK99 471 aa16.29■□□□□ 0.2
CLK1-209ENST00000472679 AKT1S1Q96B36 256 aa16.26■□□□□ 0.19
CLK1-209ENST00000472679 REM2Q8IYK8 340 aaPredicted RBP16.15■□□□□ 0.18
CLK1-209ENST00000472679 VASPP50552 380 aaPredicted RBP16.13■□□□□ 0.17
CLK1-209ENST00000472679 STAG3Q9UJ98 1225 aa16.08■□□□□ 0.16
CLK1-209ENST00000472679 SPDYE1Q8NFV5 336 aaPredicted RBP16.04■□□□□ 0.16
CLK1-209ENST00000472679 CLEC11AQ9Y240 323 aa16.01■□□□□ 0.15
CLK1-209ENST00000472679 PITPNM1O00562 1244 aa15.97■□□□□ 0.15
CLK1-209ENST00000472679 IFNLR1Q8IU57 520 aaPredicted RBP15.97■□□□□ 0.15
CLK1-209ENST00000472679 MIER1Q8N108 512 aa15.91■□□□□ 0.14
CLK1-209ENST00000472679 PLCD3Q8N3E9 789 aa15.89■□□□□ 0.13
CLK1-209ENST00000472679 RTN4Q9NQC3 1192 aaKnown RBP15.88■□□□□ 0.13
CLK1-209ENST00000472679 PRR29P0C7W0 189 aa15.87■□□□□ 0.13
CLK1-209ENST00000472679 AMER1Q5JTC6 1135 aaPredicted RBP15.82■□□□□ 0.12
CLK1-209ENST00000472679 KLHL34Q8N239 644 aa15.79■□□□□ 0.12
CLK1-209ENST00000472679 CREBZFQ9NS37 354 aa15.77■□□□□ 0.12
CLK1-209ENST00000472679 PLEKHG5O94827 1062 aa15.72■□□□□ 0.11
CLK1-209ENST00000472679 CHRDL2Q6WN34 429 aa15.69■□□□□ 0.1
CLK1-209ENST00000472679 SPOCK2Q92563 424 aa15.68■□□□□ 0.1
CLK1-209ENST00000472679 CHADLQ6NUI6 762 aa15.65■□□□□ 0.1
CLK1-209ENST00000472679 MNX1P50219 401 aaPredicted RBP15.64■□□□□ 0.09
CLK1-209ENST00000472679 ZBTB47Q9UFB7 747 aaPredicted RBP15.63■□□□□ 0.09
CLK1-209ENST00000472679 FXR2P51116 673 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLK1-209ENST00000472679 PRKAR2AP13861 404 aaKnown RBP15.56■□□□□ 0.08
CLK1-209ENST00000472679 PIP4P2Q8N4L2 257 aa15.56■□□□□ 0.08
CLK1-209ENST00000472679 NUBP1P53384 320 aa15.51■□□□□ 0.07
CLK1-209ENST00000472679 PKD2Q13563 968 aa15.51■□□□□ 0.07
CLK1-209ENST00000472679 FARP1Q9Y4F1 1045 aaPredicted RBP15.47■□□□□ 0.07
CLK1-209ENST00000472679 NPM1P06748 294 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLK1-209ENST00000472679 CIZ1Q9ULV3 898 aaPredicted RBP15.42■□□□□ 0.06
CLK1-209ENST00000472679 RASEFQ8IZ41 740 aa15.41■□□□□ 0.06
CLK1-209ENST00000472679 DCAF8Q5TAQ9 597 aa15.36■□□□□ 0.05
CLK1-209ENST00000472679 ECM2O94769 699 aaPredicted RBP15.34■□□□□ 0.05
CLK1-209ENST00000472679 GSE1Q14687 1217 aa15.32■□□□□ 0.04
CLK1-209ENST00000472679 FAM212AQ96EL1 285 aa15.31■□□□□ 0.04
CLK1-209ENST00000472679 TSPYL2Q9H2G4 693 aaPredicted RBP15.26■□□□□ 0.03
CLK1-209ENST00000472679 RGL2O15211 777 aa15.22■□□□□ 0.03
CLK1-209ENST00000472679 TRIM41Q8WV44 630 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms