RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 CUL4AQ13619 759 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 NTRK3Q16288 839 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 RRP12Q5JTH9 1297 aaKnown RBP11.67□□□□□ -0.54
SF3A1-207ENST00000471342 NBPF11Q86T75 865 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 ESR2Q92731 530 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 SHISA4Q96DD7 197 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 ZNF341Q9BYN7 854 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 PDRG1Q9NUG6 133 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 NYAP2Q9P242 653 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 PHIPQ8WWQ0 1821 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 UBE2Q2LH0YL09 131 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 HMGB1P09429 215 aaKnown RBP11.66□□□□□ -0.54
SF3A1-207ENST00000471342 EEF2P13639 858 aaKnown RBP11.66□□□□□ -0.54
SF3A1-207ENST00000471342 MCCP23508 829 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 PSMA5P28066 241 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 MAP3K9P80192 1104 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 APOBRQ0VD83 1088 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 ABCB5Q2M3G0 1257 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 SUPT20HL1Q3ZLR7 823 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 TMEM179Q6ZVK1 233 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 SCYL3Q8IZE3 742 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 ZNF444Q8N0Y2 327 aaPredicted RBP11.66□□□□□ -0.54
SF3A1-207ENST00000471342 BRF1Q92994 677 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 DDRGK1Q96HY6 314 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 TMEM87BQ96K49 555 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 WDR18Q9BV38 432 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 MKNK2Q9HBH9 465 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 GPBP1L1Q9HC44 474 aaPredicted RBP11.66□□□□□ -0.54
SF3A1-207ENST00000471342 ANGEL1Q9UNK9 670 aaKnown RBP11.66□□□□□ -0.54
SF3A1-207ENST00000471342 TMX2Q9Y320 296 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 AFG3L2Q9Y4W6 797 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 CYP46A1Q9Y6A2 500 aa11.66□□□□□ -0.54
SF3A1-207ENST00000471342 OTOFQ9HC10 1997 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 DDIT3P35638 169 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 SCRN1Q12765 414 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 APOA5Q6Q788 366 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 RBM46Q8TBY0 533 aaKnown RBP11.65□□□□□ -0.54
SF3A1-207ENST00000471342 WRNIP1Q96S55 665 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 MYL10Q9BUA6 226 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 EMILIN3Q9NT22 766 aa11.65□□□□□ -0.54
SF3A1-207ENST00000471342 TSPY2A6NKD2 308 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 FAM155AB1AL88 458 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-207ENST00000471342 IFIT3O14879 490 aaKnown RBP11.64□□□□□ -0.55
SF3A1-207ENST00000471342 CYTH3O43739 400 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 PFKFB2O60825 505 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 TOMM70O94826 608 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 FDPSP14324 419 aaKnown RBP11.64□□□□□ -0.55
SF3A1-207ENST00000471342 PRKG1Q13976 671 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 RAB11FIP4Q86YS3 637 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 STAG2Q8N3U4 1231 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 CRACR2BQ8N4Y2 399 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-207ENST00000471342 ZNF274Q96GC6 653 aaPredicted RBP11.64□□□□□ -0.55
SF3A1-207ENST00000471342 TMX3Q96JJ7 454 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 MS4A4AQ96JQ5 239 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 KANSL2Q9H9L4 492 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 CLIP2Q9UDT6 1046 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 CLEC11AQ9Y240 323 aa11.64□□□□□ -0.55
SF3A1-207ENST00000471342 PALM3A6NDB9 673 aaPredicted RBP11.63□□□□□ -0.55
SF3A1-207ENST00000471342 SPDYE5A6NIY4 337 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 CELF2O95319 508 aaKnown RBP11.63□□□□□ -0.55
SF3A1-207ENST00000471342 SLC3A2P08195 630 aaKnown RBP11.63□□□□□ -0.55
SF3A1-207ENST00000471342 TSPY3P0CV98 308 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 TSPY8P0CW00 308 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 RXRAP19793 462 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 TMEM67Q5HYA8 995 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 SH3D19Q5HYK7 790 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 DCAF15Q66K64 600 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 RALYLQ86SE5 291 aaKnown RBP11.63□□□□□ -0.55
SF3A1-207ENST00000471342 SAPCD2Q86UD0 394 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 NECAB1Q8N987 351 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 UPF2Q9HAU5 1272 aaKnown RBP11.63□□□□□ -0.55
SF3A1-207ENST00000471342 GINM1Q9NU53 330 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 MAD2L2Q9UI95 211 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 LIMCH1Q9UPQ0 1083 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 KCNH4Q9UQ05 1017 aa11.63□□□□□ -0.55
SF3A1-207ENST00000471342 USP17L5A8MUK1 530 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 IRF6O14896 467 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 TTLL1O95922 423 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 NDUFB10O96000 172 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 ASNSP08243 561 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 PDHBP11177 359 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 TOP1P11387 765 aaKnown RBP11.62□□□□□ -0.55
SF3A1-207ENST00000471342 ADD1P35611 737 aaKnown RBP11.62□□□□□ -0.55
SF3A1-207ENST00000471342 FKBP1BP68106 108 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 GPAT2Q6NUI2 795 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 ZNF654Q8IZM8 581 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 LRRC47Q8N1G4 583 aaKnown RBP11.62□□□□□ -0.55
SF3A1-207ENST00000471342 GMCL1P1Q8NEA9 526 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 SMARCC2Q8TAQ2 1214 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 MTMR8Q96EF0 704 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 C12orf42Q96LP6 360 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 ZIC5Q96T25 663 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 KIAA1683Q9H0B3 1180 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 NCOA5Q9HCD5 579 aaKnown RBP11.62□□□□□ -0.55
SF3A1-207ENST00000471342 GBA2Q9HCG7 927 aaPredicted RBP11.62□□□□□ -0.55
SF3A1-207ENST00000471342 SYNPO2Q9UMS6 1093 aa11.62□□□□□ -0.55
SF3A1-207ENST00000471342 KLF18A0A0U1RQI7 1052 aa11.61□□□□□ -0.55
SF3A1-207ENST00000471342 UNCXA6NJT0 531 aa11.61□□□□□ -0.55
SF3A1-207ENST00000471342 F5H6K3 240 aa11.61□□□□□ -0.55
SF3A1-207ENST00000471342 ADAMTS3O15072 1205 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms