RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 NEMFO60524 1076 aa21.86■■□□□ 1.09
VIM-203ENST00000469543 TPM4P67936 248 aa21.86■■□□□ 1.09
VIM-203ENST00000469543 SMYD4Q8IYR2 804 aaPredicted RBP21.86■■□□□ 1.09
VIM-203ENST00000469543 ACTN4O43707 911 aaKnown RBP21.86■■□□□ 1.09
VIM-203ENST00000469543 CDC25AP30304 524 aa21.86■■□□□ 1.09
VIM-203ENST00000469543 CCDC112Q8NEF3 446 aa21.86■■□□□ 1.09
VIM-203ENST00000469543 SAMSN1Q9NSI8 373 aaKnown RBP21.86■■□□□ 1.09
VIM-203ENST00000469543 RTCBQ9Y3I0 505 aaKnown RBP21.86■■□□□ 1.09
VIM-203ENST00000469543 COL5A3P25940 1745 aaPredicted RBP21.86■■□□□ 1.09
VIM-203ENST00000469543 CNTNAP4Q9C0A0 1308 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 TSPY2A6NKD2 308 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 PRPF3O43395 683 aaKnown RBP21.85■■□□□ 1.09
VIM-203ENST00000469543 FGRP09769 529 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 KRT2P35908 639 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 GSDMDP57764 484 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 NCBP1Q09161 790 aaKnown RBP21.85■■□□□ 1.09
VIM-203ENST00000469543 RASGRP2Q7LDG7 609 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 SLC44A5Q8NCS7 719 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 UBE2Q2Q8WVN8 375 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.85■■□□□ 1.09
VIM-203ENST00000469543 TRIM75PA6NK02 468 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 IMPACTQ9P2X3 320 aa21.85■■□□□ 1.09
VIM-203ENST00000469543 VWA3AA6NCI4 1184 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 RCSD1Q6JBY9 416 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 TMTC3Q6ZXV5 915 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 STAG2Q8N3U4 1231 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 SYMPKQ92797 1274 aaKnown RBP21.84■■□□□ 1.09
VIM-203ENST00000469543 MTA3Q9BTC8 594 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 CRNKL1Q9BZJ0 848 aaKnown RBP21.84■■□□□ 1.09
VIM-203ENST00000469543 NFE2L3Q9Y4A8 694 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 MYH6P13533 1939 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 PPP4R3BQ5MIZ7 849 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 KLHL10Q6JEL2 608 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 PIK3AP1Q6ZUJ8 805 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 DZIP1Q86YF9 867 aaKnown RBP21.84■■□□□ 1.09
VIM-203ENST00000469543 IL17RBQ9NRM6 502 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 DUOX1Q9NRD9 1551 aa21.84■■□□□ 1.09
VIM-203ENST00000469543 USP17L3A6NCW0 530 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 USP17L4A6NCW7 530 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 STX17P56962 302 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 USP17L1Q7RTZ2 530 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 GPKOWQ92917 476 aaPredicted RBP eCLIP21.83■■□□□ 1.09
VIM-203ENST00000469543 SMARCE1Q969G3 411 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 NYXQ9GZU5 481 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 SPDYE4A6NLX3 237 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 SARSP49591 514 aaKnown RBP21.83■■□□□ 1.09
VIM-203ENST00000469543 PTGDRQ13258 359 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 RASGRP4Q8TDF6 673 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 SH3RF3Q8TEJ3 882 aaPredicted RBP21.83■■□□□ 1.09
VIM-203ENST00000469543 LAMB2P55268 1798 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 CASZ1Q86V15 1759 aa21.83■■□□□ 1.09
VIM-203ENST00000469543 TFAP4Q01664 338 aa21.83■■□□□ 1.08
VIM-203ENST00000469543 PPP1R13BQ96KQ4 1090 aa21.83■■□□□ 1.08
VIM-203ENST00000469543 CPVLQ9H3G5 476 aa21.83■■□□□ 1.08
VIM-203ENST00000469543 CNTNAP5Q8WYK1 1306 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 XBP1P17861 261 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 ZNF215Q9UL58 517 aaPredicted RBP21.82■■□□□ 1.08
VIM-203ENST00000469543 PAXBP1Q9Y5B6 917 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 CD44P16070 742 aaKnown RBP21.82■■□□□ 1.08
VIM-203ENST00000469543 CDK11BP21127 795 aaKnown RBP21.82■■□□□ 1.08
VIM-203ENST00000469543 MCM7P33993 719 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 RCAN1P53805 252 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 VPS72Q15906 364 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 CTCFLQ8NI51 663 aaPredicted RBP21.82■■□□□ 1.08
VIM-203ENST00000469543 MAP7D2Q96T17 732 aa21.82■■□□□ 1.08
VIM-203ENST00000469543 SAP30BPQ9UHR5 308 aaKnown RBP21.82■■□□□ 1.08
VIM-203ENST00000469543 A0A1B0GUL6 1792 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 RFC4P35249 363 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 PLCD1P51178 756 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 MORC3Q14149 939 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 SYT10Q6XYQ8 523 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 TNFRSF25Q93038 417 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 LTBP4Q8N2S1 1624 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 ADKP55263 362 aaKnown RBP21.81■■□□□ 1.08
VIM-203ENST00000469543 IL17AQ16552 155 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 FAM196AQ6ZSG2 479 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 PDCL2Q8N4E4 241 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 ANKRD2Q9GZV1 360 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 BLZF1Q9H2G9 400 aa21.81■■□□□ 1.08
VIM-203ENST00000469543 NLRP5P59047 1200 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 ZNF579Q8NAF0 562 aaKnown RBP21.8■■□□□ 1.08
VIM-203ENST00000469543 LRRN4CLQ8ND94 238 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 TGFBRAP1Q8WUH2 860 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 USP5P45974 858 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 CBX1P83916 185 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 NT5DC1Q5TFE4 455 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 VSTM4Q8IW00 320 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 ANKRD7Q92527 254 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 ATP8A2Q9NTI2 1148 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 CEP131Q9UPN4 1083 aa21.8■■□□□ 1.08
VIM-203ENST00000469543 TOP1P11387 765 aaKnown RBP21.79■■□□□ 1.08
VIM-203ENST00000469543 TYW1BQ6NUM6 668 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 PAGE5Q96GU1 130 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 LRRC4BQ9NT99 713 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 USP21Q9UK80 565 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 IRS2Q9Y4H2 1338 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 UTRNP46939 3433 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 SEMA3EO15041 775 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 ORC4O43929 436 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 TOM1O60784 492 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms