RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 ERC1Q8IUD2 1116 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 LCORLQ8N3X6 602 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 SLC44A5Q8NCS7 719 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 SDR42E1Q8WUS8 393 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 DNAJC2Q99543 621 aaKnown RBP25.06■■□□□ 1.6
COL6A1-203ENST00000466285 FEZ1Q99689 392 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 GINM1Q9NU53 330 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 RPTORQ8N122 1335 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 ZNF532Q9HCE3 1301 aa25.06■■□□□ 1.6
COL6A1-203ENST00000466285 GOLIM4O00461 696 aa25.05■■□□□ 1.6
COL6A1-203ENST00000466285 EVI5O60447 810 aa25.05■■□□□ 1.6
COL6A1-203ENST00000466285 IGSF3O75054 1194 aa25.05■■□□□ 1.6
COL6A1-203ENST00000466285 GABPAQ06546 454 aa25.05■■□□□ 1.6
COL6A1-203ENST00000466285 MORN1Q5T089 497 aa25.05■■□□□ 1.6
COL6A1-203ENST00000466285 CLEC10AQ8IUN9 316 aa25.05■■□□□ 1.6
COL6A1-203ENST00000466285 MAGEB6P1A0A0J9YX57 407 aa25.04■■□□□ 1.6
COL6A1-203ENST00000466285 SOX1O00570 391 aaPredicted RBP25.04■■□□□ 1.6
COL6A1-203ENST00000466285 CCND3P30281 292 aaPredicted RBP25.04■■□□□ 1.6
COL6A1-203ENST00000466285 ABCB5Q2M3G0 1257 aa25.04■■□□□ 1.6
COL6A1-203ENST00000466285 CERKLQ49MI3 558 aaPredicted RBP25.04■■□□□ 1.6
COL6A1-203ENST00000466285 SLC9C2Q5TAH2 1124 aa25.04■■□□□ 1.6
COL6A1-203ENST00000466285 HMX1Q9NP08 348 aaPredicted RBP25.04■■□□□ 1.6
COL6A1-203ENST00000466285 BTBD7Q9P203 1132 aa25.04■■□□□ 1.6
COL6A1-203ENST00000466285 PFASO15067 1338 aa25.04■■□□□ 1.6
COL6A1-203ENST00000466285 CACNB2Q08289 660 aaPredicted RBP25.03■■□□□ 1.6
COL6A1-203ENST00000466285 SEPT2Q15019 361 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 C7orf61Q8IZ16 206 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 SOCS4Q8WXH5 440 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 NUDT12Q9BQG2 462 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 ZBTB40Q9NUA8 1239 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 FLRT1Q9NZU1 646 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 NR2E3Q9Y5X4 410 aa25.03■■□□□ 1.6
COL6A1-203ENST00000466285 A0A1W2PRG0 241 aa25.02■■□□□ 1.6
COL6A1-203ENST00000466285 PRKAB2O43741 272 aa25.02■■□□□ 1.6
COL6A1-203ENST00000466285 KIAA1755Q5JYT7 1200 aa25.02■■□□□ 1.6
COL6A1-203ENST00000466285 KIAA1683Q9H0B3 1180 aa25.02■■□□□ 1.6
COL6A1-203ENST00000466285 ARMT1Q9H993 441 aa25.02■■□□□ 1.6
COL6A1-203ENST00000466285 STAP2Q9UGK3 403 aa25.02■■□□□ 1.6
COL6A1-203ENST00000466285 ZMYND8Q9ULU4 1186 aaPredicted RBP25.02■■□□□ 1.6
COL6A1-203ENST00000466285 COL11A1P12107 1806 aaPredicted RBP25.01■■□□□ 1.59
COL6A1-203ENST00000466285 ZNF236Q9UL36 1845 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 SPDYE16A6NNV3 312 aaPredicted RBP25.01■■□□□ 1.59
COL6A1-203ENST00000466285 ZKSCAN1P17029 563 aaPredicted RBP25.01■■□□□ 1.59
COL6A1-203ENST00000466285 MAPK4P31152 587 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 C20orf194Q5TEA3 1177 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 CATSPERGQ6ZRH7 1159 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 NECAB2Q7Z6G3 386 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 DYNLL2Q96FJ2 89 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 OGDHLQ9ULD0 1010 aa25.01■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L15C9J2P7 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L13C9JLJ4 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L11C9JVI0 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L18D6R9N7 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L22D6RA61 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L17D6RBQ6 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L19D6RCP7 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L20D6RJB6 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 USP17L24Q0WX57 530 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 PLEKHH3Q7Z736 793 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 TTC6Q86TZ1 520 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 KIF1BPQ96EK5 621 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 RPAP3Q9H6T3 665 aaPredicted RBP25■■□□□ 1.59
COL6A1-203ENST00000466285 DCP1AQ9NPI6 582 aaPredicted RBP25■■□□□ 1.59
COL6A1-203ENST00000466285 DNAH12Q6ZR08 3092 aa25■■□□□ 1.59
COL6A1-203ENST00000466285 CYP2D7A0A087X1C5 515 aa24.99■■□□□ 1.59
COL6A1-203ENST00000466285 POLR3DP05423 398 aaPredicted RBP24.99■■□□□ 1.59
COL6A1-203ENST00000466285 XRCC5P13010 732 aaKnown RBP24.99■■□□□ 1.59
COL6A1-203ENST00000466285 PDE3AQ14432 1141 aa24.99■■□□□ 1.59
COL6A1-203ENST00000466285 CERS3Q8IU89 383 aa24.99■■□□□ 1.59
COL6A1-203ENST00000466285 ANKLE1Q8NAG6 615 aa24.99■■□□□ 1.59
COL6A1-203ENST00000466285 APBA2Q99767 749 aa24.99■■□□□ 1.59
COL6A1-203ENST00000466285 MCM9Q9NXL9 1143 aa24.99■■□□□ 1.59
COL6A1-203ENST00000466285 SYN1P17600 705 aa24.98■■□□□ 1.59
COL6A1-203ENST00000466285 LHX8Q68G74 356 aa24.98■■□□□ 1.59
COL6A1-203ENST00000466285 CLASRPQ8N2M8 674 aaKnown RBP24.98■■□□□ 1.59
COL6A1-203ENST00000466285 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.98■■□□□ 1.59
COL6A1-203ENST00000466285 LRCH3Q96II8 777 aa24.98■■□□□ 1.59
COL6A1-203ENST00000466285 CRNKL1Q9BZJ0 848 aaKnown RBP24.98■■□□□ 1.59
COL6A1-203ENST00000466285 BOLA2Q9H3K6 86 aa24.98■■□□□ 1.59
COL6A1-203ENST00000466285 C11orf49Q9H6J7 331 aa24.98■■□□□ 1.59
COL6A1-203ENST00000466285 RABGAP1Q9Y3P9 1069 aa24.98■■□□□ 1.59
COL6A1-203ENST00000466285 GREB1LQ9C091 1923 aaPredicted RBP24.97■■□□□ 1.59
COL6A1-203ENST00000466285 MBD4O95243 580 aa24.97■■□□□ 1.59
COL6A1-203ENST00000466285 RGS2P41220 211 aa24.97■■□□□ 1.59
COL6A1-203ENST00000466285 HSP90AB4PQ58FF6 505 aa24.97■■□□□ 1.59
COL6A1-203ENST00000466285 NBPF3Q9H094 633 aa24.97■■□□□ 1.59
COL6A1-203ENST00000466285 MPHOSPH10O00566 681 aaKnown RBP24.96■■□□□ 1.59
COL6A1-203ENST00000466285 IFIT2P09913 472 aaKnown RBP24.96■■□□□ 1.59
COL6A1-203ENST00000466285 ADD2P35612 726 aa24.96■■□□□ 1.59
COL6A1-203ENST00000466285 MAP2K5Q13163 448 aa24.96■■□□□ 1.59
COL6A1-203ENST00000466285 TTF1Q15361 905 aaPredicted RBP24.96■■□□□ 1.59
COL6A1-203ENST00000466285 WDR78Q5VTH9 848 aa24.96■■□□□ 1.59
COL6A1-203ENST00000466285 RPAP2Q8IXW5 612 aaPredicted RBP24.96■■□□□ 1.59
COL6A1-203ENST00000466285 NPLOC4Q8TAT6 608 aa24.96■■□□□ 1.59
COL6A1-203ENST00000466285 DDX19BQ9UMR2 479 aa24.96■■□□□ 1.59
COL6A1-203ENST00000466285 COL6A3P12111 3177 aa24.95■■□□□ 1.59
COL6A1-203ENST00000466285 SMARCA5O60264 1052 aaPredicted RBP24.95■■□□□ 1.58
COL6A1-203ENST00000466285 COL6A1P12109 1028 aa24.95■■□□□ 1.58
COL6A1-203ENST00000466285 AKR1B1P15121 316 aa24.95■■□□□ 1.58
COL6A1-203ENST00000466285 LBX2Q6XYB7 198 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms