RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ARMC5Q96C12 935 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 STRBPQ96SI9 672 aaKnown RBP13.93□□□□□ -0.18
USP54-209ENST00000464635 PUS7LQ9H0K6 701 aaKnown RBP13.93□□□□□ -0.18
USP54-209ENST00000464635 LIMCH1Q9UPQ0 1083 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 AFG3L2Q9Y4W6 797 aa13.93□□□□□ -0.18
USP54-209ENST00000464635 ZNF532Q9HCE3 1301 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 TRIM75PA6NK02 468 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 M0R2C6 588 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 CTNND1O60716 968 aaKnown RBP13.92□□□□□ -0.18
USP54-209ENST00000464635 CYP21A2P08686 494 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 CYP2C8P10632 490 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 SLC4A3P48751 1232 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 IMMTQ16891 758 aaKnown RBP13.92□□□□□ -0.18
USP54-209ENST00000464635 BLOC1S2Q6QNY1 142 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 GADL1Q6ZQY3 521 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 NEK1Q96PY6 1258 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 MTA3Q9BTC8 594 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 AGXT2Q9BYV1 514 aa13.92□□□□□ -0.18
USP54-209ENST00000464635 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.92□□□□□ -0.18
USP54-209ENST00000464635 TBC1D12O60347 775 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 FGAP02671 866 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 CASTP20810 708 aaKnown RBP13.91□□□□□ -0.18
USP54-209ENST00000464635 RPS6KB1P23443 525 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 DYNLL1P63167 89 aaKnown RBP13.91□□□□□ -0.18
USP54-209ENST00000464635 MAPKAPK5Q8IW41 473 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 TGFBRAP1Q8WUH2 860 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 TMX3Q96JJ7 454 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 ZNF333Q96JL9 665 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 TRIM47Q96LD4 638 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 JAKMIP1Q96N16 626 aaKnown RBP13.91□□□□□ -0.18
USP54-209ENST00000464635 NOL10Q9BSC4 688 aaKnown RBP13.91□□□□□ -0.18
USP54-209ENST00000464635 PDRG1Q9NUG6 133 aa13.91□□□□□ -0.18
USP54-209ENST00000464635 FLT1P17948 1338 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 DOCK3Q8IZD9 2030 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 MYCP01106 439 aaPredicted RBP13.9□□□□□ -0.18
USP54-209ENST00000464635 HSP90AA1P07900 732 aaKnown RBP13.9□□□□□ -0.18
USP54-209ENST00000464635 BCRP11274 1271 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 PCP11498 1178 aaKnown RBP13.9□□□□□ -0.18
USP54-209ENST00000464635 PPP4CP60510 307 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 NUCB2P80303 420 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 KIF22Q14807 665 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 SHROOM1Q2M3G4 852 aaPredicted RBP13.9□□□□□ -0.18
USP54-209ENST00000464635 SLC9C1Q4G0N8 1177 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 CCDC129Q6ZRS4 1044 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 DHX32Q7L7V1 743 aaKnown RBP13.9□□□□□ -0.18
USP54-209ENST00000464635 MAGEB6Q8N7X4 407 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 SH3TC2Q8TF17 1288 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 PARK7Q99497 189 aaKnown RBP13.9□□□□□ -0.18
USP54-209ENST00000464635 NACAP1Q9BZK3 213 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 DNAJC18Q9H819 358 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 BRCA2P51587 3418 aa13.9□□□□□ -0.18
USP54-209ENST00000464635 FOXP2O15409 715 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 BAG3O95817 575 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 CYP7A1P22680 504 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 PSMC4P43686 418 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 JAG1P78504 1218 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 ARHGEF6Q15052 776 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 SLC4A8Q2Y0W8 1093 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 ADCK5Q3MIX3 580 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 CLEC17AQ6ZS10 378 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 FASTKD5Q7L8L6 764 aaKnown RBP13.89□□□□□ -0.19
USP54-209ENST00000464635 MIGA1Q8NAN2 632 aa13.89□□□□□ -0.19
USP54-209ENST00000464635 SAP30BPQ9UHR5 308 aaKnown RBP13.89□□□□□ -0.19
USP54-209ENST00000464635 MKI67P46013 3256 aaKnown RBP13.89□□□□□ -0.19
USP54-209ENST00000464635 LAMA4Q16363 1823 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 ZNF213O14771 459 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 PLCG2P16885 1265 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 EN2P19622 333 aaPredicted RBP13.88□□□□□ -0.19
USP54-209ENST00000464635 OSBPP22059 807 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 CAP2P40123 477 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 EVCP57679 992 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 EXOSC10Q01780 885 aaKnown RBP13.88□□□□□ -0.19
USP54-209ENST00000464635 TREML2Q5T2D2 321 aa13.88□□□□□ -0.19
USP54-209ENST00000464635 UPF3BQ9BZI7 483 aaKnown RBP13.88□□□□□ -0.19
USP54-209ENST00000464635 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.88□□□□□ -0.19
USP54-209ENST00000464635 CHGBP05060 677 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 AK2P54819 239 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 SPP2Q13103 211 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 IFNL3Q8IZI9 196 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 RGS22Q8NE09 1264 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 RIOK1Q9BRS2 568 aaKnown RBP13.87□□□□□ -0.19
USP54-209ENST00000464635 PI4KBQ9UBF8 816 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 SRRDQ9UH36 339 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 HERC5Q9UII4 1024 aaKnown RBP13.87□□□□□ -0.19
USP54-209ENST00000464635 ANAPC4Q9UJX5 808 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 AGTPBP1Q9UPW5 1226 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 MYPNQ86TC9 1320 aa13.87□□□□□ -0.19
USP54-209ENST00000464635 MYH8P13535 1937 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 PLXNB2O15031 1838 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 GSG1L2A8MUP6 293 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 E7EWF7 191 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 GDF11O95390 407 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 FMNL1O95466 1100 aaPredicted RBP13.86□□□□□ -0.19
USP54-209ENST00000464635 HMGCS2P54868 508 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 NCOA7Q8NI08 942 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 DHX36Q9H2U1 1008 aaKnown RBP13.86□□□□□ -0.19
USP54-209ENST00000464635 CNNM2Q9H8M5 875 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 ATP8A2Q9NTI2 1148 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 SLC45A1Q9Y2W3 748 aa13.86□□□□□ -0.19
USP54-209ENST00000464635 BAZ2AQ9UIF9 1905 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms