RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PRKAB2O43741 272 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 CYP2D6P10635 497 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 VCAM1P19320 739 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 GPRC5AQ8NFJ5 357 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 SHISA4Q96DD7 197 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 P2RX7Q99572 595 aaKnown RBP16.79■□□□□ 0.28
USP4-206ENST00000461553 PAGR1Q9BTK6 254 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 SLC4A4Q9Y6R1 1079 aa16.79■□□□□ 0.28
USP4-206ENST00000461553 RLFQ13129 1914 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 FRMPD3Q5JV73 1810 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L15C9J2P7 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L13C9JLJ4 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L11C9JVI0 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L18D6R9N7 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L22D6RA61 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L17D6RBQ6 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L19D6RCP7 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L20D6RJB6 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 GJB1P08034 283 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 GJA8P48165 433 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 ERVK-9P63128 1117 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 ERVK-24P63145 666 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 EVX2Q03828 476 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 USP17L24Q0WX57 530 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 SEPT2Q15019 361 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 TSHZ3Q63HK5 1081 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 TMEM179Q6ZVK1 233 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 CCAR1Q8IX12 1150 aaKnown RBP16.78■□□□□ 0.28
USP4-206ENST00000461553 SLC44A5Q8NCS7 719 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 ACER1Q8TDN7 264 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 SOCS4Q8WXH5 440 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 YTHDC1Q96MU7 727 aaKnown RBP16.78■□□□□ 0.28
USP4-206ENST00000461553 UNC93B1Q9H1C4 597 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 TXNRD2Q9NNW7 524 aa16.78■□□□□ 0.28
USP4-206ENST00000461553 COL11A1P12107 1806 aaPredicted RBP16.77■□□□□ 0.28
USP4-206ENST00000461553 HMGCRP04035 888 aa16.77■□□□□ 0.28
USP4-206ENST00000461553 CHGBP05060 677 aa16.77■□□□□ 0.28
USP4-206ENST00000461553 MAPK4P31152 587 aa16.77■□□□□ 0.28
USP4-206ENST00000461553 GUCY1A2P33402 732 aa16.77■□□□□ 0.28
USP4-206ENST00000461553 KBTBD3Q8NAB2 608 aa16.77■□□□□ 0.28
USP4-206ENST00000461553 PUS7LQ9H0K6 701 aaKnown RBP16.77■□□□□ 0.28
USP4-206ENST00000461553 CWC22Q9HCG8 908 aaKnown RBP16.77■□□□□ 0.28
USP4-206ENST00000461553 ARPP21Q9UBL0 812 aaPredicted RBP16.77■□□□□ 0.28
USP4-206ENST00000461553 PCDHB15Q9Y5E8 787 aa16.77■□□□□ 0.28
USP4-206ENST00000461553 TTC41PQ6P2S7 1318 aa16.76■□□□□ 0.27
USP4-206ENST00000461553 ZNF236Q9UL36 1845 aa16.76■□□□□ 0.27
USP4-206ENST00000461553 ERC2O15083 957 aa16.76■□□□□ 0.27
USP4-206ENST00000461553 U2AF1L4Q8WU68 220 aaKnown RBP16.76■□□□□ 0.27
USP4-206ENST00000461553 DYNLL2Q96FJ2 89 aa16.76■□□□□ 0.27
USP4-206ENST00000461553 RPAP3Q9H6T3 665 aaPredicted RBP16.76■□□□□ 0.27
USP4-206ENST00000461553 ZBTB47Q9UFB7 747 aaPredicted RBP16.76■□□□□ 0.27
USP4-206ENST00000461553 USP17L12C9JPN9 530 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 USP17L21D6R901 530 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 PEX10O60683 326 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 ZFYP08048 801 aaPredicted RBP16.75■□□□□ 0.27
USP4-206ENST00000461553 CCNA1P78396 465 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 ICA1Q05084 483 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 LRRFIP1Q32MZ4 808 aaKnown RBP16.75■□□□□ 0.27
USP4-206ENST00000461553 C12orf60Q5U649 245 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 CATSPERGQ6ZRH7 1159 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 APPBP2Q92624 585 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 GCC1Q96CN9 775 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 NUDT12Q9BQG2 462 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 SH2D4AQ9H788 454 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 ARHGEF10LQ9HCE6 1279 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 RBPJLQ9UBG7 517 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 RABGAP1Q9Y3P9 1069 aa16.75■□□□□ 0.27
USP4-206ENST00000461553 ALPK3Q96L96 1907 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 CYP2D7A0A087X1C5 515 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 FARP2O94887 1054 aaPredicted RBP16.74■□□□□ 0.27
USP4-206ENST00000461553 AKR1B1P15121 316 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 C16orf86Q6ZW13 317 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 CCDC17Q96LX7 622 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 CRBNQ96SW2 442 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 TANGO6Q9C0B7 1094 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 GJD2Q9UKL4 321 aa16.74■□□□□ 0.27
USP4-206ENST00000461553 SPDYE16A6NNV3 312 aaPredicted RBP16.73■□□□□ 0.27
USP4-206ENST00000461553 RNF113AO15541 343 aaKnown RBP16.73■□□□□ 0.27
USP4-206ENST00000461553 GLRX3O76003 335 aaKnown RBP16.73■□□□□ 0.27
USP4-206ENST00000461553 CYP2B6P20813 491 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 CDK8P49336 464 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 LBX2Q6XYB7 198 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 GPR142Q7Z601 462 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 DEFB118Q96PH6 123 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.73■□□□□ 0.27
USP4-206ENST00000461553 PORCNQ9H237 461 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 PAK6Q9NQU5 681 aaPredicted RBP16.73■□□□□ 0.27
USP4-206ENST00000461553 ROBO3Q96MS0 1386 aa16.73■□□□□ 0.27
USP4-206ENST00000461553 A0A1W2PRG0 241 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 GPAA1O43292 621 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 SLC34A2O95436 690 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 SGPL1O95470 568 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 ZKSCAN1P17029 563 aaPredicted RBP16.72■□□□□ 0.27
USP4-206ENST00000461553 CAPN2P17655 700 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 MX1P20591 662 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 RGS2P41220 211 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 WDR78Q5VTH9 848 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 CTR9Q6PD62 1173 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 PLEKHH3Q7Z736 793 aa16.72■□□□□ 0.27
USP4-206ENST00000461553 CLEC10AQ8IUN9 316 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms