RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 ARHGAP22Q7Z5H3 698 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 TMEM110Q86TL2 294 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 DZIP3Q86Y13 1208 aaKnown RBP3.14□□□□□ -1.91
LIG4-203ENST00000442234 CCDC50Q8IVM0 306 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 RMDN2Q96LZ7 410 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 YIPF2Q9BWQ6 316 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 MCOLN1Q9GZU1 580 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 RGL1Q9NZL6 768 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 ORC3Q9UBD5 711 aaPredicted RBP3.14□□□□□ -1.91
LIG4-203ENST00000442234 NRBP1Q9UHY1 535 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 MCM8Q9UJA3 840 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 ZMYND8Q9ULU4 1186 aaPredicted RBP3.14□□□□□ -1.91
LIG4-203ENST00000442234 NDUFB9Q9Y6M9 179 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 PPIP5K1Q6PFW1 1433 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 ADGRL2O95490 1459 aa3.14□□□□□ -1.91
LIG4-203ENST00000442234 SHPRHQ149N8 1683 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SYNMO15061 1565 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 NCOA3Q9Y6Q9 1424 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CCDC69A6NI79 296 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 TMEM88BA6NKF7 163 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 NDUFAB1O14561 156 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SYN1P17600 705 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 COL9A1P20849 921 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SLC8A1P32418 973 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 HSPA4P34932 840 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 GRIK3Q13003 919 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CUL3Q13618 768 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 MAP3K11Q16584 847 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CC2D1AQ6P1N0 951 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 OLFML1Q6UWY5 402 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CCDC80Q76M96 950 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ARHGEF25Q86VW2 580 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 NCAPG2Q86XI2 1143 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CCDC65Q8IXS2 484 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 KCTD17Q8N5Z5 321 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 HELBQ8NG08 1087 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 WDR66Q8TBY9 1149 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 BCAS4Q8TDM0 211 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ZKSCAN4Q969J2 545 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 PHACTR1Q9C0D0 580 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 FAM204AQ9H8W3 233 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 HACL1Q9UJ83 578 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 TPX2Q9ULW0 747 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 RABL2BQ9UNT1 228 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 PCDHB15Q9Y5E8 787 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ADAMTS13Q76LX8 1427 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 KIAA1107Q9UPP5 1409 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 MYO1FO00160 1098 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 EPB41L2O43491 1005 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 PFDN1O60925 122 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 GADD45BO75293 160 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 CDC45O75419 566 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 VCAM1P19320 739 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CD151P48509 253 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 RAB27AP51159 221 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CEBPZQ03701 1054 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 PPP2R3AQ06190 1150 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 NFIXQ14938 502 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 LONRF2Q1L5Z9 754 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 PREPLQ4J6C6 727 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 SLC4A10Q6U841 1118 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 B4GALNT4Q76KP1 1039 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 APBB1IPQ7Z5R6 666 aaPredicted RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 REXO1L1PQ8IX06 675 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 OGFOD1Q8N543 542 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 FAM81AQ8TBF8 368 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SLC16A10Q8TF71 515 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CACTINQ8WUQ7 758 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 KAT2BQ92831 832 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 DCPSQ96C86 337 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 TBC1D31Q96DN5 1066 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ZMAT2Q96NC0 199 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 PLEKHG4BQ96PX9 1271 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 NUP62CLQ9H1M0 184 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 BATF3Q9NR55 127 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 LMCD1Q9NZU5 365 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 FLNBO75369 2602 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 WDR33Q9C0J8 1336 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 ANKRD30BQ9BXX2 1392 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 GOLGA6L10A0A0M3HER8 536 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 PRAMEF22A3QJZ6 481 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 EFCAB8A8MWE9 144 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ADM5C9JUS6 153 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CYP27B1O15528 508 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 ZMYND10O75800 440 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 MYL1P05976 194 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 SFPQP23246 707 aaKnown RBP eCLIP3.13□□□□□ -1.91
LIG4-203ENST00000442234 NEK4P51957 841 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 INHBEP58166 350 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 APOBRQ0VD83 1088 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 CAMK4Q16566 473 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 TBC1D25Q3MII6 688 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 KBTBD12Q3ZCT8 623 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 PRPF40BQ6NWY9 871 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 BARGINQ6ZT62 677 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 VPS37DQ86XT2 251 aa3.13□□□□□ -1.91
LIG4-203ENST00000442234 RBM12BQ8IXT5 1001 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 GPR161Q8N6U8 529 aaKnown RBP3.13□□□□□ -1.91
LIG4-203ENST00000442234 LMBR1Q8WVP7 490 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms