RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 NSUN4Q96CB9 384 aaKnown RBP9.5□□□□□ -0.89
VPS50-204ENST00000438395 HTATIP2Q9BUP3 242 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 TBC1D2Q9BYX2 928 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 OSBPL5Q9H0X9 879 aaPredicted RBP9.5□□□□□ -0.89
VPS50-204ENST00000438395 AS3MTQ9HBK9 375 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 HERC5Q9UII4 1024 aaKnown RBP9.5□□□□□ -0.89
VPS50-204ENST00000438395 AGTPBP1Q9UPW5 1226 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 AFG3L2Q9Y4W6 797 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 TRIOBPQ9H2D6 2365 aa9.5□□□□□ -0.89
VPS50-204ENST00000438395 COL2A1P02458 1487 aaPredicted RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 ADCY3O60266 1144 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 SURF6O75683 361 aaKnown RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 HLA-DOAP06340 250 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 GJB1P08034 283 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 MCAMP43121 646 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 GCLCP48506 637 aaPredicted RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 IRX3P78415 501 aaPredicted RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 SPP2Q13103 211 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 MTFR1Q15390 333 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 TNNI3KQ59H18 835 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 NUDT18Q6ZVK8 323 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 TMEM57Q8N5G2 664 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 PROCA1Q8NCQ7 364 aaPredicted RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 ZNF280CQ8ND82 737 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 DPF3Q92784 378 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 DHX36Q9H2U1 1008 aaKnown RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 SNRKQ9NRH2 765 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.49□□□□□ -0.89
VPS50-204ENST00000438395 TMOD4Q9NZQ9 345 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 FPGT-TNNI3KV9GXZ4 949 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 DOCK2Q92608 1830 aa9.49□□□□□ -0.89
VPS50-204ENST00000438395 MKI67P46013 3256 aaKnown RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 RBBP6Q7Z6E9 1792 aaKnown RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 USP17L5A8MUK1 530 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 FARP2O94887 1054 aaPredicted RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 ASNSP08243 561 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 CTGFP29279 349 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 CAP2P40123 477 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 FLT3LGP49771 235 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 HMGCS2P54868 508 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 MAP3K10Q02779 954 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 CCDC84Q86UT8 332 aaPredicted RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 CCAR1Q8IX12 1150 aaKnown RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 ANKRD13CQ8N6S4 541 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 SH3RF3Q8TEJ3 882 aaPredicted RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 LRCH3Q96II8 777 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 GPR108Q9NPR9 543 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 AATFQ9NY61 560 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS50-204ENST00000438395 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.48□□□□□ -0.89
VPS50-204ENST00000438395 PI4KBQ9UBF8 816 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 NR2E3Q9Y5X4 410 aa9.48□□□□□ -0.89
VPS50-204ENST00000438395 H0YGN5 161 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 IDH1O75874 414 aaKnown RBP9.47□□□□□ -0.89
VPS50-204ENST00000438395 INHAP05111 366 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 ELNP15502 786 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 GJA8P48165 433 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 FAM110CQ1W6H9 321 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 TREML2Q5T2D2 321 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 CERS3Q8IU89 383 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 MAPKAPK5Q8IW41 473 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 U2AF1L4Q8WU68 220 aaKnown RBP9.47□□□□□ -0.89
VPS50-204ENST00000438395 DBNDD2Q9BQY9 259 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 C1orf115Q9H7X2 142 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 CWC22Q9HCG8 908 aaKnown RBP9.47□□□□□ -0.89
VPS50-204ENST00000438395 TNNQ9UQP3 1299 aa9.47□□□□□ -0.89
VPS50-204ENST00000438395 MYH2Q9UKX2 1941 aa9.46□□□□□ -0.89
VPS50-204ENST00000438395 IGSF3O75054 1194 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 TFRCP02786 760 aaKnown RBP9.46□□□□□ -0.9
VPS50-204ENST00000438395 SLURP2P0DP57 97 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 CAPN2P17655 700 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 CYP7A1P22680 504 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 IRF5Q13568 498 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 MTMR2Q13614 643 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 ERC1Q8IUD2 1116 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 SSH3Q8TE77 659 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 PXYLP1Q8TE99 480 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 ZNF384Q8TF68 577 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 TGFBRAP1Q8WUH2 860 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 SHISA4Q96DD7 197 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 FEZ1Q99689 392 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 UNC93B1Q9H1C4 597 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 GABRQQ9UN88 632 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.46□□□□□ -0.9
VPS50-204ENST00000438395 FLT1P17948 1338 aa9.46□□□□□ -0.9
VPS50-204ENST00000438395 DOCK1Q14185 1865 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 ZAP70P43403 619 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 USP5P45974 858 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 ATP8B2P98198 1209 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 MAP3K12Q12852 859 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 PDE3AQ14432 1141 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 HSP90AB4PQ58FF6 505 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 FOXP4Q8IVH2 680 aaPredicted RBP9.45□□□□□ -0.9
VPS50-204ENST00000438395 ZNF512BQ96KM6 892 aaPredicted RBP9.45□□□□□ -0.9
VPS50-204ENST00000438395 DEFB118Q96PH6 123 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 ASCC2Q9H1I8 757 aaPredicted RBP9.45□□□□□ -0.9
VPS50-204ENST00000438395 GINM1Q9NU53 330 aa9.45□□□□□ -0.9
VPS50-204ENST00000438395 SAP30BPQ9UHR5 308 aaKnown RBP9.45□□□□□ -0.9
VPS50-204ENST00000438395 BRCA2P51587 3418 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 SGPL1O95470 568 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 HMGCRP04035 888 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms