RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 NT5C2P49902 561 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 EVX2Q03828 476 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 PDE4BQ07343 736 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 ME3Q16798 604 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 SLC4A8Q2Y0W8 1093 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 SPDYE2Q495Y8 402 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 NKX2-3Q8TAU0 364 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 ESR2Q92731 530 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 INTS4Q96HW7 963 aaKnown RBP13.25□□□□□ -0.29
LINC00539-203ENST00000434601 CLMNQ96JQ2 1002 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 TMEM87BQ96K49 555 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 OSBPL5Q9H0X9 879 aaPredicted RBP13.25□□□□□ -0.29
LINC00539-203ENST00000434601 INCENPQ9NQS7 918 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 FOXD4L1Q9NU39 408 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.25□□□□□ -0.29
LINC00539-203ENST00000434601 FZD1Q9UP38 647 aa13.25□□□□□ -0.29
LINC00539-203ENST00000434601 COL2A1P02458 1487 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-203ENST00000434601 OTOFQ9HC10 1997 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 SH2B2O14492 632 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-203ENST00000434601 ORC4O43929 436 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 MTA3Q9BTC8 594 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 IDI2Q9BXS1 227 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 R3HDMLQ9H3Y0 253 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 DDX4Q9NQI0 724 aaKnown RBP13.24□□□□□ -0.29
LINC00539-203ENST00000434601 ZNF70Q9UC06 446 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-203ENST00000434601 TRIM17Q9Y577 477 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 CENPFP49454 3210 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 HTTP42858 3142 aa13.24□□□□□ -0.29
LINC00539-203ENST00000434601 SIPA1L1O43166 1804 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 TESPA1A2RU30 521 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 IGF2BP3O00425 579 aaKnown RBP eCLIP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 NPM3O75607 178 aaKnown RBP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 DDIT3P35638 169 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 PLCD1P51178 756 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 APOBRQ0VD83 1088 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 ST3GAL1Q11201 340 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 NFIAQ12857 509 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 SART3Q15020 963 aaKnown RBP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 ARHGEF6Q15052 776 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 C16orf86Q6ZW13 317 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 CCDC83Q8IWF9 413 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 TDRD3Q9H7E2 651 aaKnown RBP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 GPHNQ9NQX3 736 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 TMOD2Q9NZR1 351 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 ZSWIM5Q9P217 1185 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 CIZ1Q9ULV3 898 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-203ENST00000434601 MYH8P13535 1937 aa13.23□□□□□ -0.29
LINC00539-203ENST00000434601 RBBP6Q7Z6E9 1792 aaKnown RBP13.22□□□□□ -0.29
LINC00539-203ENST00000434601 IFIT3O14879 490 aaKnown RBP13.22□□□□□ -0.29
LINC00539-203ENST00000434601 PRDM1O75626 825 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 HLA-DOAP06340 250 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 CACNB3P54284 484 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 EVCP57679 992 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 TMEM67Q5HYA8 995 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 OTOP1Q7RTM1 612 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 TTC6Q86TZ1 520 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 NECAB1Q8N987 351 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 GTF3C6Q969F1 213 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 HOOK2Q96ED9 719 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 DYNLL2Q96FJ2 89 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 UBAC1Q9BSL1 405 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 ZNF287Q9HBT7 754 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 CWC22Q9HCG8 908 aaKnown RBP13.22□□□□□ -0.29
LINC00539-203ENST00000434601 FAM198AQ9UFP1 575 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.22□□□□□ -0.29
LINC00539-203ENST00000434601 CSADQ9Y600 493 aa13.22□□□□□ -0.29
LINC00539-203ENST00000434601 KLF18A0A0U1RQI7 1052 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 ERICH2A1L162 156 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 RANBP6O60518 1105 aaKnown RBP13.21□□□□□ -0.29
LINC00539-203ENST00000434601 PFKFB2O60825 505 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 ENTPD3O75355 529 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 LIFRP42702 1097 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 GTF2A2P52657 109 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 SP3Q02447 781 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 STK3Q13188 491 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 CRHR2Q13324 411 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 SGMS1Q86VZ5 419 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 IQCA1Q86XH1 822 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 SLC44A5Q8NCS7 719 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 IGDCC4Q8TDY8 1250 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 OPTNQ96CV9 577 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 ZNF274Q96GC6 653 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-203ENST00000434601 ELP3Q9H9T3 547 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 LY9Q9HBG7 655 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 CHMP5Q9NZZ3 219 aa13.21□□□□□ -0.29
LINC00539-203ENST00000434601 NAP1L2Q9ULW6 460 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-203ENST00000434601 ATRNL1Q5VV63 1379 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 TNKSO95271 1327 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 TSPY2A6NKD2 308 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 GOLGA8BA8MQT2 603 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 TCP10L2B9ZVM9 353 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 GJA5P36382 358 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 MAP3K9P80192 1104 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 GABPAQ06546 454 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 WTAPQ15007 396 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 TEPSINQ96N21 525 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 ZKSCAN3Q9BRR0 538 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 EHD4Q9H223 541 aa13.2□□□□□ -0.3
LINC00539-203ENST00000434601 DHX36Q9H2U1 1008 aaKnown RBP13.2□□□□□ -0.3
LINC00539-203ENST00000434601 EFCC1Q9HA90 598 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms